MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-455

Family name MIR-455 (all species)
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues
Orthologues Aca-Mir-455-v1  Ami-Mir-455-v1  Bta-Mir-455-v1  Cfa-Mir-455-v1  Cja-Mir-455-v1  Cli-Mir-455-v1  Cmi-Mir-455-v1  Cpi-Mir-455-v1  Cpo-Mir-455-v1  Dno-Mir-455-v1  Eca-Mir-455-v1  Ete-Mir-455-v1  Gga-Mir-455-v1  Gja-Mir-455  Hsa-Mir-455-v1  Laf-Mir-455-v1  Lch-Mir-455  Loc-Mir-455-v1  Mdo-Mir-455-v1  Mml-Mir-455-v1  Mmr-Mir-455-v1  Mmu-Mir-455-v1  Mun-Mir-455  Oan-Mir-455-v1  Ocu-Mir-455-v1  Pab-Mir-455-v1  Pbv-Mir-455  Pma-Mir-455  Rno-Mir-455-v1  Sha-Mir-455-v1  Spt-Mir-455  Sto-Mir-455-v1  Tgu-Mir-455-v1  Xtr-Mir-455 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(Eburgeri_3)		 FYBX02009160.1: 1836436-1836493 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-455-v1)		 Mir-455-v2 FYBX02009160.1: 1836435-1836494 [+] UCSC Ensembl
Mir-455-v3 FYBX02009160.1: 1836435-1836494 [+] UCSC Ensembl
Mir-455-v1 FYBX02009160.1: 1836436-1836493 [+] UCSC Ensembl
Variant

Ebu-Mir-455-v1
Seed AUGUGCC
Precursor
(pre-Mir +30nt flank)		 
AGCAUUGCCCUCUUGUACCAGUUGUGGUUGUAUGUGCCUGUGGACCACAUCGUAGCUGUGGUCACCAUGCAGUCCGUGGGCAUAUACACCUACGGCUGGCUCUGCGGGGCCGAGACAA
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Structure
        10          20        30        40        50        
AGCAUUGCCCUCUUGUA--|         U          UG     CA   C UAGCU 
                   CCAGUUGUGG UGUAUGUGCC  UGGAC  CAU G     G
                   GGUCGGCAUC ACAUAUACGG  GCCUG  GUA C     U
AACAGAGCCGGGGCGUCUC^         C          GU     AC   C ACUGG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Ebu-Mir-455-v1_5p
mirBase accessionNone
Sequence 
0- UAUGUGCCUGUGGACCACAUCG -22
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Star sequence

Ebu-Mir-455-v1_3p* (predicted)
mirBase accessionNone
Sequence 
36- AUGCAGUCCGUGGGCAUAUACA -58
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Variant

Ebu-Mir-455-v2
Seed CAGUCCG
Precursor
(pre-Mir +30nt flank)		 
GAGCAUUGCCCUCUUGUACCAGUUGUGGUUGUAUGUGCCUGUGGACCACAUCGUAGCUGUGGUCACCAUGCAGUCCGUGGGCAUAUACACCUACGGCUGGCUCUGCGGGGCCGAGACAAA
Get precursor sequence
Structure
        10          20        30        40        50         
GAGCAUUGCCCUCUUGUA--|         U          UG     CA   CGUAGCU 
                    CCAGUUGUGG UGUAUGUGCC  UGGAC  CAU       G
                    GGUCGGCAUC ACAUAUACGG  GCCUG  GUA       U
AAACAGAGCCGGGGCGUCUC^         C          GU     AC   CCACUGG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Ebu-Mir-455-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUAUGUGCCUGUGGACCACAU -21
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Mature sequence

Ebu-Mir-455-v2_3p
mirBase accessionNone
Sequence 
39- GCAGUCCGUGGGCAUAUACAC -60
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Variant

Ebu-Mir-455-v3
Seed GCAGUCC
Precursor
(pre-Mir +30nt flank)		 
GAGCAUUGCCCUCUUGUACCAGUUGUGGUUGUAUGUGCCUGUGGACCACAUCGUAGCUGUGGUCACCAUGCAGUCCGUGGGCAUAUACACCUACGGCUGGCUCUGCGGGGCCGAGACAAA
Get precursor sequence
Structure
        10          20        30        40        50         
GAGCAUUGCCCUCUUGUA--|         U          UG     CA   CGUAGCU 
                    CCAGUUGUGG UGUAUGUGCC  UGGAC  CAU       G
                    GGUCGGCAUC ACAUAUACGG  GCCUG  GUA       U
AAACAGAGCCGGGGCGUCUC^         C          GU     AC   CCACUGG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
To
Star sequence

Ebu-Mir-455-v3_5p* (predicted)
mirBase accessionNone
Sequence 
0- GUAUGUGCCUGUGGACCACAUC -22
Get sequence
Mature sequence

Ebu-Mir-455-v3_3p
mirBase accessionNone
Sequence 
38- UGCAGUCCGUGGGCAUAUACAC -60
Get sequence