MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-361

Family name MIR-361 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-361
Paralogues
Orthologues Bta-Mir-361-v1  Cfa-Mir-361-v1  Cja-Mir-361-v1  Cpo-Mir-361-v1  Dno-Mir-361-v1  Eca-Mir-361-v1  Ete-Mir-361-v1  Hsa-Mir-361-v1  Laf-Mir-361  Mml-Mir-361-v1  Mmr-Mir-361-v1  Mmu-Mir-361-v1  Ocu-Mir-361-v1  Pab-Mir-361-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chrX: 84708914-84708975 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-361-v1)		 Mir-361-v1 chrX: 84708914-84708975 [-] UCSC Ensembl
Mir-361-v2 chrX: 84708915-84708974 [-] UCSC Ensembl
Variant

Rno-Mir-361-v1
Seed UAUCAGA
Precursor
(pre-Mir +30nt flank)		 
CACUAUGAUUCUUUCUUGGGACUCGGAAGCUUAUCAGAAUCUCCAGGGGUACUUAUUAUUUGAAAAGUCCCCCAGGUGUGAUUCUGAUUCGUUUCCCUCUCCUGCUCCUCCUCCUCCUCCUC
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Structure
        10          20        30        40          50         
CACUAUGAUUCUUUCUU--    CUC      UU         U--| A    U  UUAUUA 
                   GGGA   GGAAGC  AUCAGAAUC   CC GGGG AC      U
                   UCCU   CCUUUG  UAGUCUUAG   GG CCCC UG      U
CUCCUCCUCCUCCUCCUCG    CUC      CU         UGU^ A    C  AAAAGU 
120       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-361-v1_5p
mirBase accessionMIMAT0003117
Sequence 
0- UUAUCAGAAUCUCCAGGGGUAC -22
Get sequence
Proposed targets microrna.org: MIMAT0003117
TargetScanVert: rno-miR-361-5p
miRDB: MIMAT0003117
Star sequence

Rno-Mir-361-v1_3p*
mirBase accessionMIMAT0017199
Sequence 
38- CCCCCAGGUGUGAUUCUGAUUCGU -62
Get sequence
Proposed targets TargetScanVert: rno-miR-361-3p
miRDB: MIMAT0017199
Variant

Rno-Mir-361-v2
Seed CCCCCAG
Precursor
(pre-Mir +30nt flank)		 
ACUAUGAUUCUUUCUUGGGACUCGGAAGCUUAUCAGAAUCUCCAGGGGUACUUAUUAUUUGAAAAGUCCCCCAGGUGUGAUUCUGAUUCGUUUCCCUCUCCUGCUCCUCCUCCUCCUCCU
Get precursor sequence
Structure
        10          20        30        40          50        
ACUAUGAUUCUUUCUUG--   CUC      UU         U--| A    U   UAUUA 
                   GGA   GGAAGC  AUCAGAAUC   CC GGGG ACU     U
                   CCU   CCUUUG  UAGUCUUAG   GG CCCC UGA     U
UCCUCCUCCUCCUCCUCGU   CUC      CU         UGU^ A    C   AAAGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
CommentThe mature form of this variant is most highly expressed as a 2 nt shorter form but is rarely accompanied by a 19 nt corresponding 5p star read.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-361-v2_5p*
mirBase accessionMIMAT0003117
Sequence 
0- UAUCAGAAUCUCCAGGGGUACU -22
Get sequence
Proposed targets microrna.org: MIMAT0003117
TargetScanVert: rno-miR-361-5p
miRDB: MIMAT0003117
Mature sequence

Rno-Mir-361-v2_3p
mirBase accessionMIMAT0017199
Sequence 
36- UCCCCCAGGUGUGAUUCUGAUUCG -60
Get sequence
Proposed targets TargetScanVert: rno-miR-361-3p
miRDB: MIMAT0017199