MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-361

Family name MIR-361 (all species)
Species Cow (Bos taurus)
MiRBase ID bta-mir-361
Paralogues
Orthologues Cfa-Mir-361-v1  Cja-Mir-361-v1  Cpo-Mir-361-v1  Dno-Mir-361-v1  Eca-Mir-361-v1  Ete-Mir-361-v1  Hsa-Mir-361-v1  Laf-Mir-361  Mml-Mir-361-v1  Mmr-Mir-361-v1  Mmu-Mir-361-v1  Ocu-Mir-361-v1  Pab-Mir-361-v1  Rno-Mir-361-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037357.1: 66328073-66328135 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-361-v1)		 Mir-361-v1 NC_037357.1: 66328073-66328135 [+] UCSC Ensembl
Mir-361-v2 NC_037357.1: 66328074-66328134 [+] UCSC Ensembl
Variant

Bta-Mir-361-v1
Seed UAUCAGA
Precursor
(pre-Mir +30nt flank)		 
CAUGGUGAUUCUUCCCUGGGAUUUGGGAGCUUAUCAGAAUCUCCAGGGGUACUUAUAAUUUGAAAAAGUCCCCCAGGUGUGAUUCUGAUUUGCUUCCUUCUCCUUCUCCUCCUCCUGUGAGAA
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Structure
        10          20        30        40          50          
CAUGGUGAUUCUUCCCU--    UUU      UU         U--| A    U  UUAUAAU 
                   GGGA   GGGAGC  AUCAGAAUC   CC GGGG AC       \
                   UCCU   CCUUCG  UAGUCUUAG   GG CCCC UG       U
AAGAGUGUCCUCCUCCUCU    CUU      UU         UGU^ A    C  AAAAAGU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-361-v1_5p
mirBase accessionMIMAT0003830
Sequence 
0- UUAUCAGAAUCUCCAGGGGUAC -22
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Proposed targets TargetScanVert: bta-miR-361
Star sequence

Bta-Mir-361-v1_3p*
mirBase accessionNone
Sequence 
39- CCCCCAGGUGUGAUUCUGAUUUGC -63
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Variant

Bta-Mir-361-v2
Seed CCCCCAG
Precursor
(pre-Mir +30nt flank)		 
AUGGUGAUUCUUCCCUGGGAUUUGGGAGCUUAUCAGAAUCUCCAGGGGUACUUAUAAUUUGAAAAAGUCCCCCAGGUGUGAUUCUGAUUUGCUUCCUUCUCCUUCUCCUCCUCCUGUGAGA
Get precursor sequence
Structure
        10          20        30        40          50         
AUGGUGAUUCUUCCCUG--   UUU      UU         U--| A    U   UAUAAU 
                   GGA   GGGAGC  AUCAGAAUC   CC GGGG ACU      \
                   CCU   CCUUCG  UAGUCUUAG   GG CCCC UGA      U
AGAGUGUCCUCCUCCUCUU   CUU      UU         UGU^ A    C   AAAAGU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThe mature form of this variant is most highly expressed as a 2 nt shorter form but is rarely accompanied by a 19 nt corresponding 5p star read.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Star sequence

Bta-Mir-361-v2_5p*
mirBase accessionMIMAT0003830
Sequence 
0- UAUCAGAAUCUCCAGGGGUACU -22
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Proposed targets TargetScanVert: bta-miR-361
Mature sequence

Bta-Mir-361-v2_3p
mirBase accessionNone
Sequence 
37- UCCCCCAGGUGUGAUUCUGAUUUG -61
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