MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-361

Family name MIR-361 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-361
Paralogues
Orthologues Bta-Mir-361-v1  Cfa-Mir-361-v1  Cja-Mir-361-v1  Cpo-Mir-361-v1  Dno-Mir-361-v1  Ete-Mir-361-v1  Hsa-Mir-361-v1  Laf-Mir-361  Mml-Mir-361-v1  Mmr-Mir-361-v1  Mmu-Mir-361-v1  Ocu-Mir-361-v1  Pab-Mir-361-v1  Rno-Mir-361-v1 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009179.1: 68955684-68955746 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-361-v1)		 Mir-361-v1 CM009179.1: 68955684-68955746 [-] UCSC Ensembl
Mir-361-v2 CM009179.1: 68955685-68955745 [-] UCSC Ensembl
Variant

Eca-Mir-361-v1
Seed UAUCAGA
Precursor
(pre-Mir +30nt flank)		 
ACCAGUGAUUCUUCCCUGGGAUUUGGGAGCUUAUCAGAAUCUCCAGGGGUACUGAUAAUUUUAAAAAGUCCCCCAGGCGUGAUUCUGAUUUGCUUCCUUCUCCUCCUCCUCCUCCUCUUCUUC
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Structure
        10          20        30        40          50          
ACCAGUGAUUCUUCCCU--    UUU      UU         U--| A    U  UGAUAAU 
                   GGGA   GGGAGC  AUCAGAAUC   CC GGGG AC       \
                   UCCU   CCUUCG  UAGUCUUAG   GG CCCC UG       U
CUUCUUCUCCUCCUCCUCC    CUU      UU         UGC^ A    C  AAAAAUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-361-v1_5p
mirBase accessionMIMAT0013208
Sequence 
0- UUAUCAGAAUCUCCAGGGGUAC -22
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Star sequence

Eca-Mir-361-v1_3p*
mirBase accessionMIMAT0013209
Sequence 
39- CCCCCAGGCGUGAUUCUGAUUUGC -63
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Variant

Eca-Mir-361-v2
Seed CCCCCAG
Precursor
(pre-Mir +30nt flank)		 
CCAGUGAUUCUUCCCUGGGAUUUGGGAGCUUAUCAGAAUCUCCAGGGGUACUGAUAAUUUUAAAAAGUCCCCCAGGCGUGAUUCUGAUUUGCUUCCUUCUCCUCCUCCUCCUCCUCUUCUU
Get precursor sequence
Structure
        10          20        30        40          50         
CCAGUGAUUCUUCCCUG--   UUU      UU         U--| A    U   GAUAAU 
                   GGA   GGGAGC  AUCAGAAUC   CC GGGG ACU      \
                   CCU   CCUUCG  UAGUCUUAG   GG CCCC UGA      U
UUCUUCUCCUCCUCCUCCU   CUU      UU         UGC^ A    C   AAAAUU 
 .       110       100        90        80        70        60
Deep sequencing
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CommentThe mature form of this variant is most highly expressed as a 2 nt shorter form but is rarely accompanied by a 19 nt corresponding 5p star read.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-361-v2_5p*
mirBase accessionMIMAT0013208
Sequence 
0- UAUCAGAAUCUCCAGGGGUACU -22
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Mature sequence

Eca-Mir-361-v2_3p
mirBase accessionMIMAT0013209
Sequence 
37- UCCCCCAGGCGUGAUUCUGAUUUG -61
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