Mir-199-P2-v2

MirGeneDB ID

Rno-Mir-199-P2

Family name

MIR-199 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

Paralogues

Rno-Mir-199-P1-v1 Rno-Mir-199-P2-v1

Orthologues

Aca-Mir-199-P2-v1 Ami-Mir-199-P2-v1 Bta-Mir-199-P2-v1 Cfa-Mir-199-P2-v1 Cja-Mir-199-P2-v1 Cli-Mir-199-P2-v1 Cmi-Mir-199-P2-v1 Cpi-Mir-199-P2-v1 Cpo-Mir-199-P2-v1 Dno-Mir-199-P2-v1 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2b-v1 Eca-Mir-199-P2-v1 Ete-Mir-199-P2-v1 Gga-Mir-199-P2-v1 Gja-Mir-199-P2-v1 Gmo-Mir-199-P2a-v1 Hsa-Mir-199-P2-v1 Laf-Mir-199-P2-v1 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Mal-Mir-199-P2a-v1 Mdo-Mir-199-P2-v1 Mml-Mir-199-P2-v1 Mmr-Mir-199-P2-v1 Mmu-Mir-199-P2-v1 Oan-Mir-199-P2-v1 Ocu-Mir-199-P2-v1 Pab-Mir-199-P2-v1 Pbv-Mir-199-P2-v1 Pma-Mir-199-o2-v1 Sha-Mir-199-P2-v1 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Tgu-Mir-199-P2-v1 Tni-Mir-199-P2a-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr3: 11348209-11348269 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v2)

Mir-199-P2-v1 chr3: 11348209-11348269 [+] UCSC Ensembl
Mir-199-P2-v2 chr3: 11348209-11348269 [+] UCSC Ensembl
Mir-199-P2-v3 chr3: 11348209-11348269 [+] UCSC Ensembl

Variant

Rno-Mir-199-P2-v2

Seed

ACAGUAG

Precursor
(pre-Mir +30nt flank)

UGGAUGGACCAGAGGAUACCUCCCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGU

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUGGACCAGAGGAUA-  UC   -|    C       U        C   U  GGACU 
                   CC  CCC GUCUA CCAGUGU UAGACUAC UGU CA     C
                   GG  GGG CGGAU GGUUACA GUCUGAUG ACA GU     C
UGCCGCGGCUCCCAGAUUG  UC   U^    U       C        -   U  UAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-199-P2-v2_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUACCUGUUCA -24

Get sequence

Mature sequence

Rno-Mir-199-P2-v2_3p

mirBase accession

None

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Rno-Mir-199-P2-v1

Seed

CAGUAGU

Precursor
(pre-Mir +30nt flank)

UGGAUGGACCAGAGGAUACCUCCCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGU

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUGGACCAGAGGAUA-  UC   -|    C       U        C   U AGGACU 
                   CC  CCC GUCUA CCAGUGU UAGACUAC UGU C      C
                   GG  GGG CGGAU GGUUACA GUCUGAUG ACA G      C
UGCCGCGGCUCCCAGAUUG  UC   U^    U       C        -   U UUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-199-P2-v1_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUACCUGUUC -23

Get sequence

Mature sequence

Rno-Mir-199-P2-v1_3p

mirBase accession

None

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Rno-Mir-199-P2-v3

Seed

AGUAGUC

Precursor
(pre-Mir +30nt flank)

UGGAUGGACCAGAGGAUACCUCCCCGUCUACCCAGUGUUUAGACUACCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGU

Get precursor sequence

Structure

        10         20         30        40        50        60
UGGAUGGACCAGAGGAUA-  UC   -|    C       U        C   UCAGGACU 
                   CC  CCC GUCUA CCAGUGU UAGACUAC UGU        C
                   GG  GGG CGGAU GGUUACA GUCUGAUG ACA        C
UGCCGCGGCUCCCAGAUUG  UC   U^    U       C        -   UGUUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Star sequence

Rno-Mir-199-P2-v3_5p*

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUACCUGUU -22

Get sequence

Mature sequence

Rno-Mir-199-P2-v3_3p

mirBase accession

None

Sequence

40- CAGUAGUCUGCACAUUGGUUA -61

Get sequence