MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-101-P2

Family name MIR-101 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-101b
Paralogues Rno-Mir-101-P1-v1  Rno-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P2-v1  Ami-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Eca-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gga-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Lch-Mir-101-P2  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tgu-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr1: 247263747-247263803 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-101-P2-v2)		 Mir-101-P2-v1 chr1: 247263746-247263804 [+] UCSC Ensembl
Mir-101-P2-v2 chr1: 247263747-247263803 [+] UCSC Ensembl
Variant

Rno-Mir-101-P2-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
AGGUAGAUCUGAGACUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCUGUAGAUCUGAAAGGUACAGUACUGUGAUAGCUGAAGAAUGGUGGUGCCAUCACGUUGAGAAGAGG
Get precursor sequence
Structure
        10          20        30        40        50        
AGGUAGAUCUGAGACUGA--| UG  C                    CGA    GUAGA 
                    AC  UC UUUUUCGGUUAUCAUGGUAC   UGCU     U
                    UG  GG AAGAAGUCGAUAGUGUCAUG   AUGG     C
GGAGAAGAGUUGCACUACCG^ GU  U                    AC-    AAAGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-101-P2-v2_5p*
mirBase accessionMIMAT0017045
Sequence 
0- CGGUUAUCAUGGUACCGAUGCUG -23
Get sequence
Proposed targets TargetScanVert: rno-miR-101b-5p
miRDB: MIMAT0017045
Mature sequence

Rno-Mir-101-P2-v2_3p
mirBase accessionMIMAT0000615
Sequence 
35- GUACAGUACUGUGAUAGCUGAA -57
Get sequence
Proposed targets microrna.org: MIMAT0000615
TargetScanVert: rno-miR-101b-3p
miRDB: MIMAT0000615
Variant

Rno-Mir-101-P2-v1
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
CAGGUAGAUCUGAGACUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCUGUAGAUCUGAAAGGUACAGUACUGUGAUAGCUGAAGAAUGGUGGUGCCAUCACGUUGAGAAGAGGA
Get precursor sequence
Structure
        10          20        30        40        50         
CAGGUAGAUCUGAGACUGA--| UG  C                    CGA    GUAGA 
                     AC  UC UUUUUCGGUUAUCAUGGUAC   UGCU     U
                     UG  GG AAGAAGUCGAUAGUGUCAUG   AUGG     C
AGGAGAAGAGUUGCACUACCG^ GU  U                    AC-    AAAGU 
       110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Star sequence

Rno-Mir-101-P2-v1_5p*
mirBase accessionMIMAT0017045
Sequence 
0- UCGGUUAUCAUGGUACCGAUGCU -23
Get sequence
Proposed targets TargetScanVert: rno-miR-101b-5p
miRDB: MIMAT0017045
Mature sequence

Rno-Mir-101-P2-v1_3p
mirBase accessionMIMAT0000615
Sequence 
37- UACAGUACUGUGAUAGCUGAAG -59
Get sequence
Proposed targets microrna.org: MIMAT0000615
TargetScanVert: rno-miR-101b-3p
miRDB: MIMAT0000615