Mir-101-P2-v1

MirGeneDB ID

Aca-Mir-101-P2

Family name

MIR-101 (all species)

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-101-2

Paralogues

Aca-Mir-101-P1-v1

Orthologues

Ami-Mir-101-P2-v1 Bta-Mir-101-P2-v1 Cfa-Mir-101-P2-v1 Cja-Mir-101-P2-v1 Cli-Mir-101-P2-v1 Cmi-Mir-101-P2-v1 Cpi-Mir-101-P2-v1 Cpo-Mir-101-P2-v1 Dno-Mir-101-P2-v1 Dre-Mir-101-P2-v1 Eca-Mir-101-P2-v1 Ete-Mir-101-P2-v1 Gga-Mir-101-P2-v1 Gja-Mir-101-P2-v1 Gmo-Mir-101-P2-v1 Hsa-Mir-101-P2-v1 Laf-Mir-101-P2-v1 Lch-Mir-101-P2 Loc-Mir-101-P2-v1 Mal-Mir-101-P2-v1 Mdo-Mir-101-P2-v1 Mml-Mir-101-P2-v1 Mmr-Mir-101-P2-v1 Mmu-Mir-101-P2-v1 Mun-Mir-101-P2-v1 Neu-Mir-101-P2-v1 Oan-Mir-101-P2-v1 Ocu-Mir-101-P2-v1 Pab-Mir-101-P2-v1 Pbv-Mir-101-P2-v1 Rno-Mir-101-P2-v1 Sha-Mir-101-P2-v1 Spt-Mir-101-P2 Sto-Mir-101-P2-v1 Tgu-Mir-101-P2-v1 Tni-Mir-101-P2-v1 Xla-Mir-101-P2a-v1 Xla-Mir-101-P2b-v1 Xtr-Mir-101-P2-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

2: 52137657-52137715 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-101-P2-v1)

Mir-101-P2-v1 2: 52137657-52137715 [+] UCSC Ensembl
Mir-101-P2-v2 2: 52137658-52137714 [+] UCSC Ensembl

Variant

Aca-Mir-101-P2-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

UAAAACAACUAGACUGUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUAUCUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGAUGGUGCCAUCACAAUGAGAUGGGAU

Get precursor sequence

Structure

        10          20        30        40        50         
UAAAACAACUAGACUGUGA--|     C                    CG     GUAUA 
                     ACUGUC UUUUUCGGUUAUCAUGGUAC  GUGCU     U
                     UGGUAG AAGAAGUCAAUAGUGUCAUG  CAUGG     C
UAGGGUAGAGUAACACUACCG^     U                    A-     AAAGU 
       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-101-P2-v1_5p*

mirBase accession

MIMAT0021712

Sequence

0- UCGGUUAUCAUGGUACCGGUGCU -23

Get sequence

Mature sequence

Aca-Mir-101-P2-v1_3p