MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-101-P2

Family name MIR-101 (all species)
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-101-P1 
Orthologues Aca-Mir-101-P2-v1  Ami-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Eca-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gga-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Rno-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tgu-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)		 JH129674.1: 173917-173975 [+] Ensembl
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
GGACAGCAGAAAGUAAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCCGUGUUCCUCAAAGGUACAGUACUGUGAUAACUGAAGAAUGGCAGUGCCAUCACAAAAAAUUAAGCA
Get precursor sequence
Structure
        10          20        30        40        50         
GGACAGCAGAAAGUAAUGA--|     C                    CGA    GUGUU 
                     ACUGUC UUUUUCGGUUAUCAUGGUAC   UGCC     C
                     UGACGG AAGAAGUCAAUAGUGUCAUG   AUGG     C
ACGAAUUAAAAAACACUACCG^     U                    AC-    AAACU 
       110       100        90        80        70         60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Star sequence

Lch-Mir-101-P2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGGUUAUCAUGGUACCGAUGCC -23
Get sequence
Mature sequence

Lch-Mir-101-P2_3p (predicted)
mirBase accessionNone
Sequence 
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence