MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-101-P2

Family name MIR-101 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-101-2
Paralogues Ami-Mir-101-P1-v1 
Orthologues Aca-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Eca-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gga-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Lch-Mir-101-P2  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Rno-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tgu-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017713772.1: 32263711-32263769 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-101-P2-v1)		 Mir-101-P2-v1 NW_017713772.1: 32263711-32263769 [+] UCSC
Mir-101-P2-v2 NW_017713772.1: 32263712-32263768 [+] UCSC
Variant

Ami-Mir-101-P2-v1
Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)		 
GGUAUCAAUUAGACCAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGAUGGUGCCAUCACAUGAGAGCUUUGA
Get precursor sequence
Structure
        10          20        30        40        50         
GGUAUCAAUUAGACCAUGA--|     C                    CG     GUAUA 
                     ACUGUC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                     UGGUAG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
AGUUUCGAGAGUACACUACCG^     U                    A-     AAAGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
To
Star sequence

Ami-Mir-101-P2-v1_5p*
mirBase accessionMIMAT0038118
Sequence 
0- UCGGUUAUCAUGGUACCGGUGCU -23
Get sequence
Mature sequence

Ami-Mir-101-P2-v1_3p
mirBase accessionMIMAT0038117
Sequence 
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence
Variant

Ami-Mir-101-P2-v2
Seed UACAGUA
Precursor
(pre-Mir +30nt flank)		 
GUAUCAAUUAGACCAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGAUGGUGCCAUCACAUGAGAGCUUUG
Get precursor sequence
Structure
        10          20        30        40        50        
GUAUCAAUUAGACCAUGA--|     C                    CG     GUAUA 
                    ACUGUC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                    UGGUAG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
GUUUCGAGAGUACACUACCG^     U                    A-     AAAGU 
     110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
To
Star sequence

Ami-Mir-101-P2-v2_5p* (predicted)
mirBase accessionMIMAT0038118
Sequence 
0- CGGUUAUCAUGGUACCGGUGCUG -23
Get sequence
Mature sequence

Ami-Mir-101-P2-v2_3p
mirBase accessionMIMAT0038117
Sequence 
35- GUACAGUACUGUGAUAACUGAA -57
Get sequence