Mir-101-P2-v1

MirGeneDB ID

Cpo-Mir-101-P2

Family name

MIR-101 (all species)

Species

Guinea pig (Cavia porcellus)

MiRBase ID

cpo-mir-101-2

Paralogues

Cpo-Mir-101-P1-v1

Orthologues

Aca-Mir-101-P2-v1 Ami-Mir-101-P2-v1 Bta-Mir-101-P2-v1 Cfa-Mir-101-P2-v1 Cja-Mir-101-P2-v1 Cli-Mir-101-P2-v1 Cmi-Mir-101-P2-v1 Cpi-Mir-101-P2-v1 Dno-Mir-101-P2-v1 Dre-Mir-101-P2-v1 Eca-Mir-101-P2-v1 Ete-Mir-101-P2-v1 Gga-Mir-101-P2-v1 Gja-Mir-101-P2-v1 Gmo-Mir-101-P2-v1 Hsa-Mir-101-P2-v1 Laf-Mir-101-P2-v1 Lch-Mir-101-P2 Loc-Mir-101-P2-v1 Mal-Mir-101-P2-v1 Mdo-Mir-101-P2-v1 Mml-Mir-101-P2-v1 Mmr-Mir-101-P2-v1 Mmu-Mir-101-P2-v1 Mun-Mir-101-P2-v1 Neu-Mir-101-P2-v1 Oan-Mir-101-P2-v1 Ocu-Mir-101-P2-v1 Pab-Mir-101-P2-v1 Pbv-Mir-101-P2-v1 Rno-Mir-101-P2-v1 Sha-Mir-101-P2-v1 Spt-Mir-101-P2 Sto-Mir-101-P2-v1 Tgu-Mir-101-P2-v1 Tni-Mir-101-P2-v1 Xla-Mir-101-P2a-v1 Xla-Mir-101-P2b-v1 Xtr-Mir-101-P2-v1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(cavPor3)

scaffold_21: 15000495-15000553 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-101-P2-v1)

Mir-101-P2-v1 scaffold_21: 15000495-15000553 [-] UCSC
Mir-101-P2-v2 scaffold_21: 15000496-15000552 [-] UCSC

Variant

Cpo-Mir-101-P2-v1

Seed

ACAGUAC

Precursor
(pre-Mir +30nt flank)

CAGCUAGAUAAGAGACUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGAUGCUGUAUGUCUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACGUUGAGAAAGAUA

Get precursor sequence

Structure

        10          20        30        40        50         
CAGCUAGAUAAGAGACUGA--| UG  C                    CGA    GUAUG 
                     AC  UC UUUUUCGGUUAUCAUGGUAC   UGCU     U
                     UG  GG AAGAAGUCAAUAGUGUCAUG   AUGG     C
AUAGAAAGAGUUGCACUACCG^ GU  U                    AC-    AAAGU 
       110       100        90        80        70         60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

Bl	Bl	Bl	Bl	Oo	Oo	Oo	Oo	To	Wh

Star sequence

Cpo-Mir-101-P2-v1_5p* (predicted)

mirBase accession

MIMAT0046949

Sequence

0- UCGGUUAUCAUGGUACCGAUGCU -23

Get sequence

Mature sequence

Cpo-Mir-101-P2-v1_3p