MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-199-o2

Family name MIR-199 (all species)
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-199b
Paralogues Pma-Mir-199-o1  Pma-Mir-199-o2-v1  Pma-Mir-199-o3 
Orthologues Aca-Mir-199-P2-v1  Ami-Mir-199-P2-v1  Bta-Mir-199-P2-v1  Cfa-Mir-199-P2-v1  Cja-Mir-199-P2-v1  Cli-Mir-199-P2-v1  Cmi-Mir-199-P2-v1  Cpi-Mir-199-P2-v1  Cpo-Mir-199-P2-v1  Dno-Mir-199-P2-v1  Dre-Mir-199-P2a-v1  Dre-Mir-199-P2b-v1  Eca-Mir-199-P2-v1  Ete-Mir-199-P2-v1  Gga-Mir-199-P2-v1  Gja-Mir-199-P2-v1  Gmo-Mir-199-P2a-v1  Hsa-Mir-199-P2-v1  Laf-Mir-199-P2-v1  Lch-Mir-199-P2  Loc-Mir-199-P2-v1  Mal-Mir-199-P2a-v1  Mdo-Mir-199-P2-v1  Mml-Mir-199-P2-v1  Mmr-Mir-199-P2-v1  Mmu-Mir-199-P2-v1  Oan-Mir-199-P2-v1  Ocu-Mir-199-P2-v1  Pab-Mir-199-P2-v1  Pbv-Mir-199-P2-v1  Rno-Mir-199-P2-v1  Sha-Mir-199-P2-v1  Spt-Mir-199-P2  Sto-Mir-199-P2-v1  Tgu-Mir-199-P2-v1  Tni-Mir-199-P2a-v1 
Node of Origin (locus) P. marinus
Node of Origin (family) Vertebrata
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046118.1: 9684029-9684090 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-o2-v3)		 Mir-199-o2-v1 NC_046118.1: 9684029-9684090 [+] UCSC Ensembl
Mir-199-o2-v2 NC_046118.1: 9684029-9684090 [+] UCSC Ensembl
Mir-199-o2-v3 NC_046118.1: 9684029-9684090 [+] UCSC Ensembl
Variant

Pma-Mir-199-o2-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
ACGAGAGGGAGACCGCUCCUGCCUCGUCUGCCCAGUGUUCUGACUACCUGUUCACGUGACAAGCAAAUGUACAGUAGUCUGCACAUUGGUUAGACUGGGUCAGGGAAUCGCACCACCCCCCC
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Structure
        10         20         30        40        50        60 
ACGAGAGGGAGACCGCU-    -|  C     C       UCU      C   UCACGUGAC 
                  CCUG CCU GUCUG CCAGUGU   GACUAC UGU         \
                  GGAC GGG CAGAU GGUUACA   CUGAUG ACA         A
CCCCCCCACCACGCUAAG    U^  U     U       CGU      -   UGUAAACGA 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-199-o2-v3_5p*
mirBase accessionMIMAT0019507
Sequence 
0- CCCAGUGUUCUGACUACCUGUU -22
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Mature sequence

Pma-Mir-199-o2-v3_3p
mirBase accessionMIMAT0019508
Sequence 
41- CAGUAGUCUGCACAUUGGUUA -62
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Variant

Pma-Mir-199-o2-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
ACGAGAGGGAGACCGCUCCUGCCUCGUCUGCCCAGUGUUCUGACUACCUGUUCACGUGACAAGCAAAUGUACAGUAGUCUGCACAUUGGUUAGACUGGGUCAGGGAAUCGCACCACCCCCCC
Get precursor sequence
Structure
        10         20         30        40        50        60 
ACGAGAGGGAGACCGCU-    -|  C     C       UCU      C   U ACGUGAC 
                  CCUG CCU GUCUG CCAGUGU   GACUAC UGU C       \
                  GGAC GGG CAGAU GGUUACA   CUGAUG ACA G       A
CCCCCCCACCACGCUAAG    U^  U     U       CGU      -   U UAAACGA 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-199-o2-v1_5p*
mirBase accessionMIMAT0019507
Sequence 
0- CCCAGUGUUCUGACUACCUGUUC -23
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Mature sequence

Pma-Mir-199-o2-v1_3p
mirBase accessionMIMAT0019508
Sequence 
40- ACAGUAGUCUGCACAUUGGUUA -62
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Variant

Pma-Mir-199-o2-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
ACGAGAGGGAGACCGCUCCUGCCUCGUCUGCCCAGUGUUCUGACUACCUGUUCACGUGACAAGCAAAUGUACAGUAGUCUGCACAUUGGUUAGACUGGGUCAGGGAAUCGCACCACCCCCCC
Get precursor sequence
Structure
        10         20         30        40        50        60 
ACGAGAGGGAGACCGCU-    -|  C     C       UCU      C   U  CGUGAC 
                  CCUG CCU GUCUG CCAGUGU   GACUAC UGU CA      \
                  GGAC GGG CAGAU GGUUACA   CUGAUG ACA GU      A
CCCCCCCACCACGCUAAG    U^  U     U       CGU      -   U  AAACGA 
120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-199-o2-v2_5p*
mirBase accessionMIMAT0019507
Sequence 
0- CCCAGUGUUCUGACUACCUGUUCA -24
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Mature sequence

Pma-Mir-199-o2-v2_3p
mirBase accessionMIMAT0019508
Sequence 
39- UACAGUAGUCUGCACAUUGGUUA -62
Get sequence