MirGeneDB 3.0

MirGeneDB ID

Mdo-Mir-199-P3

Family name MIR-199 (all species)
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-199b-3
Paralogues Mdo-Mir-199-P1-v1  Mdo-Mir-199-P2-v1  Mdo-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gja-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
3: 430288133-430288195 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)
Mir-199-P3-v1 3: 430288133-430288195 [+] UCSC Ensembl
Mir-199-P3-v2 3: 430288133-430288195 [+] UCSC Ensembl
Mir-199-P3-v3 3: 430288133-430288195 [+] UCSC Ensembl
Variant

Mdo-Mir-199-P3-v2

Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)
AAGAAUCCCCUCAAAUUCCAGCCCCACCAGCCCAGUGUUCAGACUACCUGUCCAGGAGAUUGCAAAGGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGAAAAGCAUCUACUGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGAAUCCCCUCAAAUU-  -|    CA  AGC       U        C   C  GGAGAU 
                  CC AGCCC  CC   CCAGUGU CAGACUAC UGU CA      U
                  GG UCGGG  GG   GGUUACA GUCUGAUG ACA GU      G
AGGGGUCAUCUACGAAAA  U^    UC  AUU       C        -   U  GGAAAC 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Mdo-Mir-199-P3-v2_5p*

mirBase accessionMIMAT0031066
Sequence
0- CCCAGUGUUCAGACUACCUGUCCA -24
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3-5p
Mature sequence

Mdo-Mir-199-P3-v2_3p

mirBase accessionMIMAT0026678
Sequence
40- UACAGUAGUCUGCACAUUGGUUA -63
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3p
Variant

Mdo-Mir-199-P3-v1

Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)
AAGAAUCCCCUCAAAUUCCAGCCCCACCAGCCCAGUGUUCAGACUACCUGUCCAGGAGAUUGCAAAGGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGAAAAGCAUCUACUGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGAAUCCCCUCAAAUU-  -|    CA  AGC       U        C   C AGGAGAU 
                  CC AGCCC  CC   CCAGUGU CAGACUAC UGU C       U
                  GG UCGGG  GG   GGUUACA GUCUGAUG ACA G       G
AGGGGUCAUCUACGAAAA  U^    UC  AUU       C        -   U UGGAAAC 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Mdo-Mir-199-P3-v1_5p*

mirBase accessionMIMAT0031066
Sequence
0- CCCAGUGUUCAGACUACCUGUCC -23
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3-5p
Mature sequence

Mdo-Mir-199-P3-v1_3p

mirBase accessionMIMAT0026678
Sequence
41- ACAGUAGUCUGCACAUUGGUUA -63
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3p
Variant

Mdo-Mir-199-P3-v3

Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)
AAGAAUCCCCUCAAAUUCCAGCCCCACCAGCCCAGUGUUCAGACUACCUGUCCAGGAGAUUGCAAAGGUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUUGGAAAAGCAUCUACUGGGGA
Get precursor sequence
Structure
        10          20        30        40        50        60 
AAGAAUCCCCUCAAAUU-  -|    CA  AGC       U        C   CCAGGAGAU 
                  CC AGCCC  CC   CCAGUGU CAGACUAC UGU         U
                  GG UCGGG  GG   GGUUACA GUCUGAUG ACA         G
AGGGGUCAUCUACGAAAA  U^    UC  AUU       C        -   UGUGGAAAC 
 120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Ce He Ki Te
Star sequence

Mdo-Mir-199-P3-v3_5p*

mirBase accessionMIMAT0031066
Sequence
0- CCCAGUGUUCAGACUACCUGUC -22
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3-5p
Mature sequence

Mdo-Mir-199-P3-v3_3p

mirBase accessionMIMAT0026678
Sequence
42- CAGUAGUCUGCACAUUGGUUA -63
Get sequence
Proposed targets TargetScanVert: mdo-miR-199b-3p