MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-199-P3

Family name MIR-199 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-199-P1-v1  Gja-Mir-199-P2-v1  Gja-Mir-199-P3-v1 
Orthologues Aca-Mir-199-P3-v1  Ami-Mir-199-P3-v1  Bta-Mir-199-P3-v1  Cfa-Mir-199-P3-v1  Cja-Mir-199-P3-v1  Cpi-Mir-199-P3-v1  Cpo-Mir-199-P3-v1  Dre-Mir-199-P3-v1  Eca-Mir-199-P3-v1  Ete-Mir-199-P3-v1  Gmo-Mir-199-P3-v1  Hsa-Mir-199-P3-v1  Laf-Mir-199-P3-v1  Lch-Mir-199-P3  Loc-Mir-199-P3-v1  Mal-Mir-199-P3-v1  Mdo-Mir-199-P3-v1  Mml-Mir-199-P3-v1  Mmr-Mir-199-P3-v1  Mmu-Mir-199-P3-v1  Mun-Mir-199-P3-v1  Neu-Mir-199-P3-v1  Ocu-Mir-199-P3-v1  Pab-Mir-199-P3-v1  Pbv-Mir-199-P3-v1  Pma-Mir-199-o3  Sha-Mir-199-P3-v1  Tni-Mir-199-P3-v1  Xla-Mir-199-P3a  Xla-Mir-199-P3b  Xtr-Mir-199-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015168135.1: 22565-22625 [-]
Clustered miRNAs
(< 50kb from Mir-199-P3-v2)		 Mir-199-P2-v1 NW_015168135.1: 22565-22625 [-]
Mir-199-P2-v2 NW_015168135.1: 22565-22625 [-]
Mir-199-P2-v3 NW_015168135.1: 22565-22625 [-]
Mir-199-P3-v1 NW_015168135.1: 22565-22625 [-]
Mir-199-P3-v2 NW_015168135.1: 22565-22625 [-]
Mir-199-P3-v3 NW_015168135.1: 22565-22625 [-]
Variant

Gja-Mir-199-P3-v2
Seed ACAGUAG
Precursor
(pre-Mir +30nt flank)		 
UUUCUGGACGCAGAGGCUCCACUCCGUCUGCCCAGUGUUCGGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUAUACCACAUAGACUGU
Get precursor sequence
Structure
        10         20         30        40        50        60
UUUCUGGACGCAGAGGC-    CUCC-|    C       U        C   U  GGACU 
                  UCCA     GUCUG CCAGUGU CGGACUAC UGU CA     A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA GU     C
UGUCAGAUACACCAUAUA    CGUGU^    U       C        -   U  UAGAG 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-199-P3-v2_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCGGACUACCUGUUCA -24
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Mature sequence

Gja-Mir-199-P3-v2_3p
mirBase accessionNone
Sequence 
38- UACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Gja-Mir-199-P3-v1
Seed CAGUAGU
Precursor
(pre-Mir +30nt flank)		 
UUUCUGGACGCAGAGGCUCCACUCCGUCUGCCCAGUGUUCGGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUAUACCACAUAGACUGU
Get precursor sequence
Structure
        10         20         30        40        50        60
UUUCUGGACGCAGAGGC-    CUCC-|    C       U        C   U AGGACU 
                  UCCA     GUCUG CCAGUGU CGGACUAC UGU C      A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA G      C
UGUCAGAUACACCAUAUA    CGUGU^    U       C        -   U UUAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-199-P3-v1_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCGGACUACCUGUUC -23
Get sequence
Mature sequence

Gja-Mir-199-P3-v1_3p
mirBase accessionNone
Sequence 
39- ACAGUAGUCUGCACAUUGGUUA -61
Get sequence
Variant

Gja-Mir-199-P3-v3
Seed AGUAGUC
Precursor
(pre-Mir +30nt flank)		 
UUUCUGGACGCAGAGGCUCCACUCCGUCUGCCCAGUGUUCGGACUACCUGUUCAGGACUACGAGAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGUGCUGGGAUAUACCACAUAGACUGU
Get precursor sequence
Structure
        10         20         30        40        50        60
UUUCUGGACGCAGAGGC-    CUCC-|    C       U        C   UCAGGACU 
                  UCCA     GUCUG CCAGUGU CGGACUAC UGU        A
                  GGGU     CGGAU GGUUACA GUCUGAUG ACA        C
UGUCAGAUACACCAUAUA    CGUGU^    U       C        -   UGUUAGAG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-199-P3-v3_5p*
mirBase accessionNone
Sequence 
0- CCCAGUGUUCGGACUACCUGUU -22
Get sequence
Mature sequence

Gja-Mir-199-P3-v3_3p
mirBase accessionNone
Sequence 
40- CAGUAGUCUGCACAUUGGUUA -61
Get sequence