MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-489
Paralogues Dre-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(danRer11)		 chr19: 40781189-40781249 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 chr19: 40781189-40781249 [-] UCSC Ensembl
Mir-489-v1 chr19: 40781190-40781248 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAAUGGACUGACUUGAGUGGUGGCCUGGUGGUCGUAUGUAUGACGUCAUUUACUUCAAAGUUUGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUACAUGGCUCAUCAGAAAGCUCA
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Structure
        10          20        30        40        50          
ACAAAUGGACUGACUUGA--|   UG CC   UG             C      UACUUCA 
                    GUGG  G  UGG  GUCGUAUGUAUGA GUCAUU       \
                    CAUC  C  AUC  CGGCAUGUAUACU CAGUGA       A
ACUCGAAAGACUACUCGGUA^   GU AA   GU             A      GGUUUGA 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-489-v2_5p*
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Dre-Mir-489-v2_3p
mirBase accessionMIMAT0002940
Sequence 
39- UGACAUCAUAUGUACGGCUGCU -61
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Proposed targets TargetScanFish: dre-miR-489