MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-218-P4-v2

Family name MIR-218 (all species)
Seed CACAUGG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-218a-1
Paralogues Dre-Mir-218-P2  Dre-Mir-218-P3  Dre-Mir-218-P4-v1 
Orthologues Aca-Mir-218-P4  Ami-Mir-218-P4  Bta-Mir-218-P4  Cfa-Mir-218-P4  Cli-Mir-218-P4  Cmi-Mir-218-P4  Cpi-Mir-218-P4  Cpo-Mir-218-P4  Dno-Mir-218-P4  Ete-Mir-218-P4  Gga-Mir-218-P4  Gja-Mir-218-P4  Gmo-Mir-218-P4  Hsa-Mir-218-P4  Lch-Mir-218-P4  Loc-Mir-218-P4  Mal-Mir-218-P4  Mdo-Mir-218-P4  Mml-Mir-218-P4  Mmu-Mir-218-P4  Oan-Mir-218-P4  Ocu-Mir-218-P4  Pbv-Mir-218-P4  Rno-Mir-218-P4  Sha-Mir-218-P4  Spt-Mir-218-P4  Sto-Mir-218-P4  Tgu-Mir-218-P4  Tni-Mir-218-P4  Xla-Mir-218-P4a  Xla-Mir-218-P4b  Xtr-Mir-218-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr14: 24562812-24562870 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-218-P4-v2)		 Mir-218-P4-v1 chr14: 24562809-24562873 [-] UCSC Ensembl
Mir-218-P4-v2 chr14: 24562812-24562870 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACUCUGGCCUAUGGUGCAGCUGUCUCUUGUGCUUGAUCUAACCAUGUGCCGCCGCCUACACAAGCCUCACAUGGUUCCGUCAAGCACCAGGGACCGCUGGGCACACUCGCACACAGCA
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Structure
        10          20        30        40        50         
CACUCUGGCCUAUGGUG--|   U      U         CU         CC CCGCCU 
                   CAGC GUCUCU GUGCUUGAU  AACCAUGUG  G      \
                   GUCG CAGGGA CACGAACUG  UUGGUACAC  C      A
ACGACACACGCUCACACGG^   C      C         CC         UC GAACAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-218-P4-v2_5p*
mirBase accessionMIMAT0001868
Sequence 
0- UGCUUGAUCUAACCAUGUGCCG -22
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Proposed targets TargetScanFish: dre-miR-218a
Mature sequence

Dre-Mir-218-P4-v2_3p
mirBase accessionNone
Sequence 
37- UCACAUGGUUCCGUCAAGCACC -59
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