MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-138-P1a

Family name MIR-138 (all species)
Seed GCUGGUG
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-138-2
Paralogues Dre-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xtr-Mir-138-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr16: 7836268-7836329 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAGACUGUUGUCUCUGAUGGAGCAGGACAGCUGGUGUUGUGAAUCAGGCCGCCGUGGUGAAAGGGUACGGCUUCUUCACAACACCAGGGUCUCACUUCAUCACACACGGCAACACCAUUC
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Structure
        10          20        30        40        50        60 
CUGAGACUGUUGUCUCU--|      CA    AG             UC      CCGUGGU 
                   GAUGGAG  GGAC  CUGGUGUUGUGAA  AGGCCG       G
                   CUACUUC  UCUG  GACCACAACACUU  UUCGGC       A
CUUACCACAACGGCACACA^      AC    G-             C-      AUGGGAA 
120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-138-P1a_5p
mirBase accessionMIMAT0001835
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Dre-Mir-138-P1a_3p*
mirBase accessionMIMAT0048652
Sequence 
41- GCUUCUUCACAACACCAGGGU -62
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