MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635937.1: 73856-73915 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCAUGAAAGACAACUGGUGAGGUGCUGCAGCUGGUGUUGUGAAUCAGGCCGCCAUAUUUACCGACCGGCUACUUCACAACACCAGGGUUGCACCUUGCUGCUGACAUCUCAUUUGCUG
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Structure
        10          20        30        40        50        60
UGCCAUGAAAGACAACU--| UG      U  AG             UCA     CCAUAU 
                   GG  AGGUGC GC  CUGGUGUUGUGAA   GGCCG      U
                   UC  UCCACG UG  GACCACAACACUU   UCGGC      U
GUCGUUUACUCUACAGUCG^ GU      U  G-             CA-     CAGCCA 
.       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-138-P1_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Cmi-Mir-138-P1_3p* (predicted)
mirBase accessionNone
Sequence 
39- GCUACUUCACAACACCAGGGU -60
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