MirGeneDB 2.1
MirGeneDB ID

Loc-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Lch-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)		 LG11: 966407-966466 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGCACUGCGUUUUCGGUAGGGUGAGGCAGCUGGUGUUGUGAAUCAGGCCGCCGCAGUGCCGGUACGGCUACUUCACAACACCAGGGUCGCACCCUAACCACAGCCGACCUGCCUCCC
Get precursor sequence
Structure
        10          20        30        40        50        60
AGCAGCACUGCGUUUUC-  -|      A   AG             UCA     CCGCAG 
                  GG UAGGGUG GGC  CUGGUGUUGUGAA   GGCCG      U
                  CC AUCCCAC CUG  GACCACAACACUU   UCGGC      G
CCCUCCGUCCAGCCGACA  A^      G   G-             CA-     AUGGCC 
.       110       100        90         80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-138-P1_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
Get sequence
Star sequence

Loc-Mir-138-P1_3p*
mirBase accessionNone
Sequence 
39- GCUACUUCACAACACCAGGGU -60
Get sequence