MirGeneDB 2.1
MirGeneDB ID

Tni-Mir-138-P1a

Family name MIR-138 (all species)
Seed GCUGGUG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Cpo-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Xtr-Mir-138-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 21: 4348474-4348534 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCCGCCUGCUGGCUCGGUGAGGCGGGGCAGCUGGUGUUGUGAAUCAGGCCGCCGCAGUCCAAGGACCGGCUACUUCCCAACACCAGGGUCCCACAUCACCCCUCACCACUUAGCAGGAU
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Structure
        10          20        30        40        50        60 
GCGCCGCCUGCUGGCUC--|    GGC     AG         U   UCA     CCGCAGU 
                   GGUGA   GGGGC  CUGGUGUUG GAA   GGCCG       \
                   CCACU   CCCUG  GACCACAAC CUU   UCGGC       C
UAGGACGAUUCACCACUCC^    ACA     G-         C   CA-     CAGGAAC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-138-P1a_5p
mirBase accessionNone
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Tni-Mir-138-P1a_3p* (predicted)
mirBase accessionNone
Sequence 
40- GCUACUUCCCAACACCAGGGU -61
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