MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-138-P1

Family name MIR-138 (all species)
Seed GCUGGUG
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-138-1
Paralogues Cpo-Mir-138-P2 
Orthologues Aca-Mir-138-P1  Ami-Mir-138-P1  Bta-Mir-138-P1  Cfa-Mir-138-P1  Cli-Mir-138-P1  Cmi-Mir-138-P1  Dno-Mir-138-P1  Dre-Mir-138-P1a  Ete-Mir-138-P1  Gga-Mir-138-P1  Gja-Mir-138-P1  Gmo-Mir-138-P1a  Gmo-Mir-138-P1b  Hsa-Mir-138-P1  Lch-Mir-138-P1  Loc-Mir-138-P1  Mal-Mir-138-P1a  Mal-Mir-138-P1b  Mdo-Mir-138-P1  Mml-Mir-138-P1  Mmu-Mir-138-P1  Mun-Mir-138-P1  Oan-Mir-138-P1  Ocu-Mir-138-P1  Pbv-Mir-138-P1  Pma-Mir-138-o1  Rno-Mir-138-P1  Sha-Mir-138-P1  Spt-Mir-138-P1  Sto-Mir-138-P1  Tgu-Mir-138-P1  Tni-Mir-138-P1a  Xla-Mir-138-P1c  Xla-Mir-138-P1d  Xtr-Mir-138-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_7: 45796470-45796530 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-138-P1)		 Mir-12082 scaffold_7: 45795923-45795982 [+] UCSC
Mir-138-P1 scaffold_7: 45796470-45796530 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUGCAGCCUCCCGGCAUGGUGCGGCGGGGCAGCUGGUGUUGUGAAUCAGGCCGUUGCCCAUCAGAGAACGGCUACUUCACAACACCAGGGUCUCACCCCACCACAGCAGCGCUCUGGACCA
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Structure
        10          20        30        40        50        60 
CUGCAGCCUCCCGGCAU--|   C  C     AG             UCA     UUGCCCA 
                   GGUG GG GGGGC  CUGGUGUUGUGAA   GGCCG       \
                   CCAC CC CUCUG  GACCACAACACUU   UCGGC       U
ACCAGGUCUCGCGACGACA^   C  A     G-             CA-     AAGAGAC 
 .       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-138-P1_5p
mirBase accessionMIMAT0046999
Sequence 
0- AGCUGGUGUUGUGAAUCAGGCCG -23
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Star sequence

Cpo-Mir-138-P1_3p*
mirBase accessionMIMAT0047000
Sequence 
40- GCUACUUCACAACACCAGGGU -61
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