MirGeneDB

MirGeneDB ID

Cli-Mir-101-P2-v2

Family name MIR-101 (all species)
Seed ACAGUAC
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-101-2
Paralogues Cli-Mir-101-P1-v1  Cli-Mir-101-P1-v2  Cli-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P2-v1  Aca-Mir-101-P2-v2  Ami-Mir-101-P2-v1  Ami-Mir-101-P2-v2  Bta-Mir-101-P2-v1  Bta-Mir-101-P2-v2  Cfa-Mir-101-P2-v1  Cfa-Mir-101-P2-v2  Cpi-Mir-101-P2-v1  Cpi-Mir-101-P2-v2  Cpo-Mir-101-P2-v1  Cpo-Mir-101-P2-v2  Dno-Mir-101-P2-v1  Dno-Mir-101-P2-v2  Dre-Mir-101-P2-v1  Dre-Mir-101-P2-v2  Ete-Mir-101-P2-v1  Ete-Mir-101-P2-v2  Gga-Mir-101-P2-v1  Gga-Mir-101-P2-v2  Hsa-Mir-101-P2-v1  Hsa-Mir-101-P2-v2  Mdo-Mir-101-P2-v1  Mdo-Mir-101-P2-v2  Mml-Mir-101-P2-v1  Mml-Mir-101-P2-v2  Mmu-Mir-101-P2-v1  Mmu-Mir-101-P2-v2  Oan-Mir-101-P2-v1  Oan-Mir-101-P2-v2  Ocu-Mir-101-P2-v1  Ocu-Mir-101-P2-v2  Rno-Mir-101-P2-v1  Rno-Mir-101-P2-v2  Sha-Mir-101-P2-v1  Sha-Mir-101-P2-v2  Sto-Mir-101-P2-v1  Sto-Mir-101-P2-v2  Tgu-Mir-101-P2-v1  Tgu-Mir-101-P2-v2  Xtr-Mir-101-P2-v1  Xtr-Mir-101-P2-v2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)
scaffold6: 3523034-3523092 [-]
Clustered MiRNAs
(< 10kb from Mir-101-P2-v2)
Mir-101-P2-v2 scaffold6: 3523034-3523092 [-]
Mir-101-P2-v1 scaffold6: 3523035-3523091 [-]
Precursor
(pre-Mir +30nt flank)
UCAAAUAAUAAGACUAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUGAGAGCUAGAA
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Structure
        10          20        30        40        50         
UCAAAUAAUAAGACUAUGA--| UG  C                    CG     GUAUA 
                     AC  UC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                     UG  GG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
AAGAUCGAGAGUACACUACCG^ GU  U                    A-     AAAGU 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
To
Star sequence

Cli-Mir-101-P2-v2_5p*

MirBase accessionMIMAT0038484
Sequence
0- UCGGUUAUCAUGGUACCGGUGCU -23
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Mature sequence

Cli-Mir-101-P2-v2_3p

MirBase accessionMIMAT0038483
Sequence
37- UACAGUACUGUGAUAACUGAAG -59
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