Mir-199-P2-v3

MirGeneDB ID

Cja-Mir-199-P2

Family name

MIR-199 (all species)

Species

White-tufted-ear marmoset (Callithrix jacchus)

MiRBase ID

Paralogues

Cja-Mir-199-P1-v1 Cja-Mir-199-P2-v1 Cja-Mir-199-P3-v1

Orthologues

Aca-Mir-199-P2-v1 Ami-Mir-199-P2-v1 Bta-Mir-199-P2-v1 Cfa-Mir-199-P2-v1 Cli-Mir-199-P2-v1 Cmi-Mir-199-P2-v1 Cpi-Mir-199-P2-v1 Cpo-Mir-199-P2-v1 Dno-Mir-199-P2-v1 Dre-Mir-199-P2a-v1 Dre-Mir-199-P2b-v1 Eca-Mir-199-P2-v1 Ete-Mir-199-P2-v1 Gga-Mir-199-P2-v1 Gja-Mir-199-P2-v1 Gmo-Mir-199-P2a-v1 Hsa-Mir-199-P2-v1 Laf-Mir-199-P2-v1 Lch-Mir-199-P2 Loc-Mir-199-P2-v1 Mal-Mir-199-P2a-v1 Mdo-Mir-199-P2-v1 Mml-Mir-199-P2-v1 Mmr-Mir-199-P2-v1 Mmu-Mir-199-P2-v1 Oan-Mir-199-P2-v1 Ocu-Mir-199-P2-v1 Pab-Mir-199-P2-v1 Pbv-Mir-199-P2-v1 Pma-Mir-199-o2-v1 Rno-Mir-199-P2-v1 Sha-Mir-199-P2-v1 Spt-Mir-199-P2 Sto-Mir-199-P2-v1 Tgu-Mir-199-P2-v1 Tni-Mir-199-P2a-v1

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)

CM021915.1: 173904910-173904970 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-199-P2-v3)

Mir-199-P2-v1 CM021915.1: 173904910-173904970 [-] UCSC Ensembl
Mir-199-P2-v2 CM021915.1: 173904910-173904970 [-] UCSC Ensembl
Mir-199-P2-v3 CM021915.1: 173904910-173904970 [-] UCSC Ensembl

Variant

Cja-Mir-199-P2-v3

Seed

CCAGUGU

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    UCAGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU        C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA        C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    UGUUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Mature sequence

Cja-Mir-199-P2-v3_5p

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUAUCUGUU -22

Get sequence

Co-mature sequence

Cja-Mir-199-P2-v3_3p

mirBase accession

None

Sequence

40- CAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Cja-Mir-199-P2-v1

Seed

CCAGUGU

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U AGGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU C      C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA G      C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U UUAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Mature sequence

Cja-Mir-199-P2-v1_5p

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUAUCUGUUC -23

Get sequence

Co-mature sequence

Cja-Mir-199-P2-v1_3p

mirBase accession

None

Sequence

39- ACAGUAGUCUGCACAUUGGUUA -61

Get sequence

Variant

Cja-Mir-199-P2-v2

Seed

CCAGUGU

Precursor
(pre-Mir +30nt flank)

AUGGACCAGAGGACACCUCCACUCCGUCUACCCAGUGUUUAGACUAUCUGUUCAGGACUCCCAAAUUGUACAGUAGUCUGCACAUUGGUUAGGCUGGGCUGGGUUAGACCCUCGGCGCCGC

Get precursor sequence

Structure

        10         20         30        40        50        60
AUGGACCAGAGGACACC-    CU  -|    C       U       U    U  GGACU 
                  UCCA  CC GUCUA CCAGUGU UAGACUA CUGU CA     C
                  GGGU  GG CGGAU GGUUACA GUCUGAU GACA GU     C
CGCCGCGGCUCCCAGAUU    CG  U^    U       C       -    U  UAAAC 
 .       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

To

Mature sequence

Cja-Mir-199-P2-v2_5p

mirBase accession

None

Sequence

0- CCCAGUGUUUAGACUAUCUGUUCA -24

Get sequence

Co-mature sequence

Cja-Mir-199-P2-v2_3p

mirBase accession

None

Sequence

38- UACAGUAGUCUGCACAUUGGUUA -61

Get sequence