MirGeneDB ID | Cgi-Mir-315-v1 |
Family name |
MIR-315 (all species) |
Seed |
UUUGAUU |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
|
Paralogues |
Cgi-Mir-315-v2
|
Orthologues |
Aae-Mir-315
Bge-Mir-315
Bpl-Mir-315
Cbr-Mir-315
Cel-Mir-315
Csc-Mir-315
Cte-Mir-315
Dan-Mir-315
Dma-Mir-315
Dme-Mir-315
Dmo-Mir-315
Dpu-Mir-315
Dsi-Mir-315
Dya-Mir-315
Efe-Mir-315
Esc-Mir-315
Isc-Mir-315
Lan-Mir-315
Lgi-Mir-315
Npo-Mir-315
Obi-Mir-315
Ovu-Mir-315
Pfl-Mir-315
Pma-Mir-315
Sko-Mir-315
Sme-Mir-315
Tca-Mir-315
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold626: 79859-79920 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AACGAGAAUAGUAAUAUAUGUCUCCUCACCUUUUGAUUGUUGCUCAGAAAGCCAUCUCUAAAAAGCGUGGCUAUCGAGCAACAAUCAAAGAUUGAAGGAGACUUGUUAACAGCAAAAUCAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AACGAGAAUAGUAAUAUAU- -| CC A A AUCUCUA
GUCUCC UCA UUUUGAUUGUUGCUC GA AGCC \
CAGAGG AGU GAAACUAACAACGAG CU UCGG A
CUACUAAAACGACAAUUGUU A^ UA - A UGCGAAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cgi-Mir-315-v1_5p |
mirBase accession | None |
Sequence |
0- UUUUGAUUGUUGCUCAGAAAGCC -23
Get sequence
|
Star sequence |
Cgi-Mir-315-v1_3p* |
mirBase accession | None |
Sequence |
40- CUAUCGAGCAACAAUCAAAGAU -62
Get sequence
|