MirGeneDB 3.0

MirGeneDB ID

Aca-Mir-489

Family name MIR-489 (all species)
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-489
Paralogues Aca-Mir-489-v1 
Orthologues Cfa-Mir-489  Cja-Mir-489  Dno-Mir-489  Eca-Mir-489  Gja-Mir-489  Laf-Mir-489  Lch-Mir-489  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(anoCar2)
6: 21750916-21750977 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)
Mir-489-v2 6: 21750916-21750977 [-] UCSC Ensembl
Mir-489-v1 6: 21750917-21750976 [-] UCSC Ensembl
Variant

Aca-Mir-489-v2

Seed GACAUCA
Precursor
(pre-Mir +30nt flank)
UAUAACAGUUUUUAAUGCGUGAUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGUUCUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCCACAUGGGACAUCAAUUAAGCAA
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Structure
        10        20           30        40        50        60
UAUAACAGUUUUUAAUGC   A    ---|   UG             C      UACUUGU 
                  GUG UGGC   UUGG  GUCGUAUGUAUGA GUCAUU       U
                  UAC ACCG   AAUC  CGGCAUGUAUACU CAGUGA       C
AACGAAUUAACUACAGGG   -    UCA^   GU             A      GGAUUUU 
120       110        100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-489-v2_5p*

mirBase accessionMIMAT0021974
Sequence
0- UGGUCGUAUGUAUGACGUCAUU -22
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Mature sequence

Aca-Mir-489-v2_3p

mirBase accessionMIMAT0021975
Sequence
40- UGACAUCAUAUGUACGGCUGCU -62
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Variant

Aca-Mir-489-v1

Seed UGACAUC
Precursor
(pre-Mir +30nt flank)
AUAACAGUUUUUAAUGCGUGAUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGUUCUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCCACAUGGGACAUCAAUUAAGCA
Get precursor sequence
Structure
        10          20        30        40        50         
AUAACAGUUUUUAAUGC--|  AU  C    UG             C       ACUUGU 
                   GUG  GG UUGG  GUCGUAUGUAUGA GUCAUUU      U
                   CAC  UC AAUC  CGGCAUGUAUACU CAGUGAG      C
ACGAAUUAACUACAGGGUA^  CG  A    GU             A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Sk Ta Ta To Wh
Star sequence

Aca-Mir-489-v1_5p*

mirBase accessionMIMAT0021974
Sequence
0- GGUCGUAUGUAUGACGUCAUUU -22
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Mature sequence

Aca-Mir-489-v1_3p

mirBase accessionMIMAT0021975
Sequence
38- GUGACAUCAUAUGUACGGCUGC -60
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