MirGeneDB 3.0

45 microRNA genes with seed CCAUAAA
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) Iso­miR 3' NTU  UG  UGUG CNNC
Tni-Mir-142-P4 V tni-mir-142b MIR-142 CCAUAAA MIMAT0002946 None 16 3999098 3999161 + Gnathostomata Vertebrata 4 No
Pbv-Mir-142-P4 V pbv-mir-142 MIR-142 CCAUAAA MIMAT0038953 MIMAT0038954 KE953330.1 386979 387043 - Gnathostomata Vertebrata 4 No
Mal-Mir-142-P4 V None MIR-142 CCAUAAA None None KV884934.1 669471 669534 + Gnathostomata Vertebrata 4 No
Gja-Mir-142-P4 V None MIR-142 CCAUAAA None None NW_015172599.1 181695 181759 - Gnathostomata Vertebrata 4 No
Cpi-Mir-142-P4 V cpi-mir-142-2 MIR-142 CCAUAAA MIMAT0037766 MIMAT0037767 JH585047 322621 322684 - Gnathostomata Vertebrata 4 Unknown
Ami-Mir-142-P4 V ami-mir-142-2 MIR-142 CCAUAAA MIMAT0038164 MIMAT0038163 NW_017710586.1 18395 18457 - Gnathostomata Vertebrata 4 Unknown
Aca-Mir-142-P4 V aca-mir-142 MIR-142 CCAUAAA MIMAT0021767 MIMAT0021768 GL343287.1 1405169 1405233 - Gnathostomata Vertebrata 4 No
Xla-Mir-142-P2b2 V xla-mir-142-2 MIR-142 CCAUAAA MIMAT0046454 MIMAT0046455 NC_030727.1 31426967 31427030 + X. laevis Vertebrata 4 No
Xla-Mir-142-P2b1 V xla-mir-142 MIR-142 CCAUAAA MIMAT0011139 None NC_030727.1 31425404 31425467 + X. laevis Vertebrata 4 No
Xtr-Mir-142-P2b V xtr-mir-142-2 MIR-142 CCAUAAA MIMAT0003602 MIMAT0003603 chr2 38446773 38446836 + Xenopus Vertebrata 4 No
Xla-Mir-142-P2a2 V None MIR-142 CCAUAAA None None NC_030727.1 31425404 31425467 + X. laevis Vertebrata 4 No
Xla-Mir-142-P2a1 V None MIR-142 CCAUAAA None None NC_030726.1 41884052 41884115 + X. laevis Vertebrata 4 No
Xtr-Mir-142-P2a V xtr-mir-142-1 MIR-142 CCAUAAA MIMAT0003602 MIMAT0003603 chr2 38445591 38445654 + Xenopus Vertebrata 4 No
Tni-Mir-142-P2 V tni-mir-142a MIR-142 CCAUAAA MIMAT0002909 None 7 2557221 2557284 + Gnathostomata Vertebrata 4 No
Tgu-Mir-142-P2 V tgu-mir-142 MIR-142 CCAUAAA MIMAT0014554 MIMAT0026999 None None None None Gnathostomata Vertebrata 4 No
Sto-Mir-142-P2 V None MIR-142 CCAUAAA None None BFAA01007505.1 105405 105468 - Gnathostomata Vertebrata 4 No
Sha-Mir-142-P2 V sha-mir-142 MIR-142 CCAUAAA MIMAT0022816 None GL856813.1 835381 835443 + Gnathostomata Vertebrata 4 No
Rno-Mir-142-P2 V rno-mir-142 MIR-142 CCAUAAA MIMAT0000847 MIMAT0000848 chr10 75050852 75050914 + Gnathostomata Vertebrata 4 No
Pab-Mir-142-P2 V None MIR-142 CCAUAAA None None CM054698.2 57538002 57538064 + Gnathostomata Vertebrata 4 Unknown
Ocu-Mir-142-P2 V ocu-mir-142 MIR-142 CCAUAAA MIMAT0048245 MIMAT0048246 chr19 29938906 29938968 + Gnathostomata Vertebrata 4 No
Oan-Mir-142-P2 V oan-mir-142 MIR-142 CCAUAAA MIMAT0006982 MIMAT0006983 NC_041744.1 11231634 11231696 - Gnathostomata Vertebrata 4 No
Neu-Mir-142-P2 V None MIR-142 CCAUAAA None None CM051814.1 370918378 370918440 - Gnathostomata Vertebrata 4 No
Mmu-Mir-142-P2 V mmu-mir-142a MIR-142 CCAUAAA MIMAT0000154 MIMAT0000155 chr11 87756865 87756927 + Gnathostomata Vertebrata 4 No
Mmr-Mir-142-P2 V None MIR-142 CCAUAAA None None CM007676.1 18356549 18356611 + Gnathostomata Vertebrata 4 No
Mml-Mir-142-P2 V mml-mir-142 MIR-142 CCAUAAA MIMAT0006199 MIMAT0006200 CM014351.1 38469538 38469600 + Gnathostomata Vertebrata 4 No
Mdo-Mir-142-P2 V mdo-mir-142 MIR-142 CCAUAAA None MIMAT0004112 2 174133942 174134004 + Gnathostomata Vertebrata 4 No
Mal-Mir-142-P2 V None MIR-142 CCAUAAA None None KV885018.1 158172 158235 + Gnathostomata Vertebrata 4 No
Loc-Mir-142-P2 V None MIR-142 CCAUAAA None None LG22 3347498 3347561 - Gnathostomata Vertebrata 4 No
Hsa-Mir-142-P2 V hsa-mir-142 MIR-142 CCAUAAA MIMAT0000433 MIMAT0000434 chr17 58331243 58331305 - Gnathostomata Vertebrata 4 No
Gmo-Mir-142-P2 V gmo-mir-142-1 MIR-142 CCAUAAA MIMAT0044045 None GeneScaffold_4424 122653 122717 - Gnathostomata Vertebrata 4 No
Gga-Mir-142-P2 V gga-mir-142 MIR-142 CCAUAAA MIMAT0001193 MIMAT0001194 19 697458 697521 - Gnathostomata Vertebrata 4 No
Ete-Mir-142-P2 V None MIR-142 CCAUAAA None None JH980319 16045198 16045260 + Gnathostomata Vertebrata 4 No
Eca-Mir-142-P2 V eca-mir-142 MIR-142 CCAUAAA MIMAT0013022 MIMAT0013023 CM009158.1 32880912 32880974 - Gnathostomata Vertebrata 4 No
Dre-Mir-142-P2 V dre-mir-142a MIR-142 CCAUAAA MIMAT0001838 MIMAT0003160 chr5 3170751 3170814 + Gnathostomata Vertebrata 4 No
Dno-Mir-142-P2 V dno-mir-142 MIR-142 CCAUAAA MIMAT0047657 MIMAT0047658 JH568468 518900 518960 - Gnathostomata Vertebrata 4 No 1
Cpo-Mir-142-P2 V cpo-mir-142 MIR-142 CCAUAAA MIMAT0047008 MIMAT0047009 scaffold_53 558170 558232 + Gnathostomata Vertebrata 4 No
Cpi-Mir-142-P2 V cpi-mir-142-1 MIR-142 CCAUAAA MIMAT0037766 MIMAT0037767 JH584397 249155 249218 - Gnathostomata Vertebrata 4 Unknown
Cmi-Mir-142-P2 V None MIR-142 CCAUAAA None None KI635901.1 108536 108597 - Gnathostomata Vertebrata 4 No
Cli-Mir-142-P2 V cli-mir-142 MIR-142 CCAUAAA MIMAT0038529 MIMAT0038530 scaffold281 47102 47165 + Gnathostomata Vertebrata 4 No
Cja-Mir-142-P2 V None MIR-142 CCAUAAA None None CM021919.1 68967226 68967288 + Gnathostomata Vertebrata 4 Yes
Cfa-Mir-142-P2 V cfa-mir-142 MIR-142 CCAUAAA MIMAT0006736 None chr9 32977393 32977455 - Gnathostomata Vertebrata 4 No
Bta-Mir-142-P2 V bta-mir-142 MIR-142 CCAUAAA MIMAT0003790 MIMAT0003791 NC_037346.1 9301443 9301505 - Gnathostomata Vertebrata 4 No
Ami-Mir-142-P2 V ami-mir-142-1 MIR-142 CCAUAAA MIMAT0038162 MIMAT0038163 NW_017709491.1 1358139 1358202 + Gnathostomata Vertebrata 4 Unknown
Laf-Mir-142-P1 V None MIR-142 CCAUAAA None None GL010058.1 10514760 10514822 + Gnathostomata Vertebrata 4 No
Ebu-Mir-142 V None MIR-142 CCAUAAA None None FYBX02010728.1 1342340 1342402 - Vertebrata Vertebrata 4 No

(red - mature/co-mature, blue - star)

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