MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-142-P2

Family name MIR-142 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-142-1
Paralogues Ami-Mir-142-P2-v1  Ami-Mir-142-P4-v1 
Orthologues Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709491.1: 1358139-1358202 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-142-P2-v4)		 Mir-142-P2-v4 NW_017709491.1: 1358139-1358202 [+] UCSC
Mir-142-P2-v1 NW_017709491.1: 1358141-1358200 [+] UCSC
Mir-142-P2-v2 NW_017709491.1: 1358141-1358200 [+] UCSC
Mir-142-P2-v3 NW_017709491.1: 1358141-1358200 [+] UCSC
Variant

Ami-Mir-142-P2-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
CCGACCGACGAUUGAGAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUACGGAGAAGAGAACG
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Structure
        10          20        30        40        50        60 
CCGACCGACGAUUGAGAG--|       G   C           A         UAAACAGC 
                    ACAGUGCA UCA CCAUAAAGUAG AAGCACUAC        A
                    UGUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
GCAAGAGAAGAGGCAUCGGG^       G   A           C         UGGGACGU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Ami-Mir-142-P2-v4_5p
mirBase accessionMIMAT0038162
Sequence 
0- CCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Ami-Mir-142-P2-v4_3p* (predicted)
mirBase accessionMIMAT0038163
Sequence 
42- AGUGUUUCCUACUUUAUGGAUG -64
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Variant

Ami-Mir-142-P2-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GACCGACGAUUGAGAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUACGGAGAAGAGAA
Get precursor sequence
Structure
        10          20        30        40        50         
GACCGACGAUUGAGAGA--|      G   C           A         UAAACAGC 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
AAGAGAAGAGGCAUCGGGU^      G   A           C         UGGGACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-142-P2-v1_5p
mirBase accessionMIMAT0038162
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Ami-Mir-142-P2-v1_3p* (predicted)
mirBase accessionMIMAT0038163
Sequence 
39- UAGUGUUUCCUACUUUAUGGA -60
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Variant

Ami-Mir-142-P2-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
GACCGACGAUUGAGAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUACGGAGAAGAGAA
Get precursor sequence
Structure
        10          20        30        40        50         
GACCGACGAUUGAGAGA--|      G   C           A         UAAACAGC 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
AAGAGAAGAGGCAUCGGGU^      G   A           C         UGGGACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-142-P2-v2_5p*
mirBase accessionMIMAT0038162
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Ami-Mir-142-P2-v2_3p
mirBase accessionMIMAT0038163
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Ami-Mir-142-P2-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
GACCGACGAUUGAGAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUACGGAGAAGAGAA
Get precursor sequence
Structure
        10          20        30        40        50         
GACCGACGAUUGAGAGA--|      G   C           A         UAAACAGC 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
AAGAGAAGAGGCAUCGGGU^      G   A           C         UGGGACGU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-142-P2-v3_5p*
mirBase accessionMIMAT0038162
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Ami-Mir-142-P2-v3_3p
mirBase accessionMIMAT0038163
Sequence 
37- UGUAGUGUUUCCUACUUUAUGGA -60
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