MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-142-P2-v1

Family name MIR-142 (all species)
Seed AUAAAGU
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-142-2
Paralogues Cpi-Mir-142-P1-v1  Cpi-Mir-142-P1-v2  Cpi-Mir-142-P1-v3  Cpi-Mir-142-P1-v4  Cpi-Mir-142-P2-v2  Cpi-Mir-142-P2-v3  Cpi-Mir-142-P2-v4 
Orthologues Aca-Mir-142-P2-v1  Aca-Mir-142-P2-v2  Aca-Mir-142-P2-v3  Aca-Mir-142-P2-v4  Ami-Mir-142-P2-v1  Ami-Mir-142-P2-v2  Ami-Mir-142-P2-v3  Ami-Mir-142-P2-v4  Dre-Mir-142-P2-v1  Dre-Mir-142-P2-v2  Dre-Mir-142-P2-v3  Gja-Mir-142-P2-v1  Gja-Mir-142-P2-v2  Gja-Mir-142-P2-v3  Gja-Mir-142-P2-v4  Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Lch-Mir-142-P2  Mal-Mir-142-P2-v1  Mal-Mir-142-P2-v2  Mal-Mir-142-P2-v3  Mal-Mir-142-P2-v4  Mun-Mir-142-P2  Pbv-Mir-142-P2-v1  Pbv-Mir-142-P2-v2  Pbv-Mir-142-P2-v3  Pbv-Mir-142-P2-v4  Tni-Mir-142-P2-v1  Tni-Mir-142-P2-v2  Tni-Mir-142-P2-v3  Tni-Mir-142-P2-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH585047: 322623-322682 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v1)
Mir-142-P2-v4 JH585047: 322621-322684 [-] UCSC Ensembl
Mir-142-P2-v1 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P2-v2 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P2-v3 JH585047: 322623-322682 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGA
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Structure
        10          20        30        40        50         
ACUGGCACCGAUACGGA--|         C            A         UAAACCGC 
                   CAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                   GUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
AGAGAGCAGGGCAACGAGU^         U            C         UGCCCUGC 
.       110       100        90        80        70        60
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-142-P2-v1_5p

mirBase accessionMIMAT0037766
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Cpi-Mir-142-P2-v1_3p*

mirBase accessionMIMAT0037767
Sequence
38- GUAGUGUUUCCUACUUUAUGGA -60
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