MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-142-P2-v4

Family name MIR-142 (all species)
Seed CCAUAAA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-142-2
Paralogues Cpi-Mir-142-P1-v1  Cpi-Mir-142-P1-v2  Cpi-Mir-142-P1-v3  Cpi-Mir-142-P1-v4  Cpi-Mir-142-P2-v1  Cpi-Mir-142-P2-v2  Cpi-Mir-142-P2-v3 
Orthologues Aca-Mir-142-P2-v1  Aca-Mir-142-P2-v2  Aca-Mir-142-P2-v3  Aca-Mir-142-P2-v4  Ami-Mir-142-P2-v1  Ami-Mir-142-P2-v2  Ami-Mir-142-P2-v3  Ami-Mir-142-P2-v4  Dre-Mir-142-P2-v1  Dre-Mir-142-P2-v2  Dre-Mir-142-P2-v3  Gja-Mir-142-P2-v1  Gja-Mir-142-P2-v2  Gja-Mir-142-P2-v3  Gja-Mir-142-P2-v4  Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Lch-Mir-142-P2  Mal-Mir-142-P2-v1  Mal-Mir-142-P2-v2  Mal-Mir-142-P2-v3  Mal-Mir-142-P2-v4  Mun-Mir-142-P2  Pbv-Mir-142-P2-v1  Pbv-Mir-142-P2-v2  Pbv-Mir-142-P2-v3  Pbv-Mir-142-P2-v4  Tni-Mir-142-P2-v1  Tni-Mir-142-P2-v2  Tni-Mir-142-P2-v3  Tni-Mir-142-P2-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH585047: 322621-322684 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v4)
Mir-142-P2-v4 JH585047: 322621-322684 [-] UCSC Ensembl
Mir-142-P2-v1 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P2-v2 JH585047: 322623-322682 [-] UCSC Ensembl
Mir-142-P2-v3 JH585047: 322623-322682 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGACUGGCACCGAUACGGACAGUGCACUCCUCCAUAAAGUAGAAAGCACUACUAAACCGCCGCGUCCCGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGGACGAGAGACC
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Structure
        10          20        30        40        50        60 
GGACUGGCACCGAUACGG--|          C            A         UAAACCGC 
                    ACAGUGCACUC UCCAUAAAGUAG AAGCACUAC        C
                    UGUCAUGUGAG AGGUAUUUCAUC UUUGUGAUG        G
CCAGAGAGCAGGGCAACGAG^          U            C         UGCCCUGC 
  120       110       100        90        80        70
Deep sequencing
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CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsNo
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-142-P2-v4_5p

mirBase accessionMIMAT0037766
Sequence
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Cpi-Mir-142-P2-v4_3p*

mirBase accessionMIMAT0037767
Sequence
42- AGUGUUUCCUACUUUAUGGAUG -64
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