MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-142-P2

Family name MIR-142 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635901.1: 108538-108595 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v1)		 Mir-142-P2-v4 KI635901.1: 108536-108597 [-] UCSC Ensembl
Mir-142-P2-v1 KI635901.1: 108538-108595 [-] UCSC Ensembl
Mir-142-P2-v2 KI635901.1: 108538-108595 [-] UCSC Ensembl
Mir-142-P2-v3 KI635901.1: 108538-108595 [-] UCSC Ensembl
Variant

Cmi-Mir-142-P2-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AGAAUCACUGAGACAGACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAACCAUCCAAUCAGUGUAGUGUUUCCUACUUUAUGGACGAGUGCACUGUGAGCUUCUGAGAGAAGAC
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Structure
        10          20        30        40        50        
AGAAUCACUGAGACAGA--|      G  A            A         UAACCAU 
                   CAGUGCA UC UCCAUAAAGUAG AAGCACUAC       C
                   GUCACGU AG AGGUAUUUCAUC UUUGUGAUG       C
CAGAAGAGAGUCUUCGAGU^      G  C            C         UGACUAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-142-P2-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Cmi-Mir-142-P2-v1_3p*
mirBase accessionNone
Sequence 
37- UAGUGUUUCCUACUUUAUGGA -58
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Variant

Cmi-Mir-142-P2-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
AGAAUCACUGAGACAGACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAACCAUCCAAUCAGUGUAGUGUUUCCUACUUUAUGGACGAGUGCACUGUGAGCUUCUGAGAGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50        
AGAAUCACUGAGACAGA--|      G  A            A         UAACCAU 
                   CAGUGCA UC UCCAUAAAGUAG AAGCACUAC       C
                   GUCACGU AG AGGUAUUUCAUC UUUGUGAUG       C
CAGAAGAGAGUCUUCGAGU^      G  C            C         UGACUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-142-P2-v2_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Cmi-Mir-142-P2-v2_3p
mirBase accessionNone
Sequence 
36- GUAGUGUUUCCUACUUUAUGGA -58
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Variant

Cmi-Mir-142-P2-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
AGAAUCACUGAGACAGACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAACCAUCCAAUCAGUGUAGUGUUUCCUACUUUAUGGACGAGUGCACUGUGAGCUUCUGAGAGAAGAC
Get precursor sequence
Structure
        10          20        30        40        50        
AGAAUCACUGAGACAGA--|      G  A            A         UAACCAU 
                   CAGUGCA UC UCCAUAAAGUAG AAGCACUAC       C
                   GUCACGU AG AGGUAUUUCAUC UUUGUGAUG       C
CAGAAGAGAGUCUUCGAGU^      G  C            C         UGACUAA 
      110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-142-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Cmi-Mir-142-P2-v3_3p
mirBase accessionNone
Sequence 
35- UGUAGUGUUUCCUACUUUAUGGA -58
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Variant

Cmi-Mir-142-P2-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
GGAGAAUCACUGAGACAGACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAACCAUCCAAUCAGUGUAGUGUUUCCUACUUUAUGGACGAGUGCACUGUGAGCUUCUGAGAGAAGACAC
Get precursor sequence
Structure
        10          20        30        40        50        60
GGAGAAUCACUGAGACAG--|       G  A            A         UAACCAU 
                    ACAGUGCA UC UCCAUAAAGUAG AAGCACUAC       C
                    UGUCACGU AG AGGUAUUUCAUC UUUGUGAUG       C
CACAGAAGAGAGUCUUCGAG^       G  C            C         UGACUAA 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-142-P2-v4_5p
mirBase accessionNone
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Cmi-Mir-142-P2-v4_3p*
mirBase accessionNone
Sequence 
40- AGUGUUUCCUACUUUAUGGACG -62
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