MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-142-P2

Family name MIR-142 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021919.1: 68967228-68967286 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v1)		 Mir-142-P2-v4 CM021919.1: 68967226-68967288 [+] UCSC Ensembl
Mir-142-P2-v1 CM021919.1: 68967228-68967286 [+] UCSC Ensembl
Mir-142-P2-v2 CM021919.1: 68967228-68967286 [+] UCSC Ensembl
Mir-142-P2-v3 CM021919.1: 68967228-68967286 [+] UCSC Ensembl
Variant

Cja-Mir-142-P2-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
ACCGACCGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGAUCACGC
Get precursor sequence
Structure
        10          20        30        40        50         
ACCGACCGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
CGCACUAGAGGCUUCGGGU^      G   A           C         UGGGAGGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Cja-Mir-142-P2-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Co-mature sequence

Cja-Mir-142-P2-v1_3p
mirBase accessionNone
Sequence 
38- UAGUGUUUCCUACUUUAUGGA -59
Get sequence
Variant

Cja-Mir-142-P2-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
ACCGACCGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGAUCACGC
Get precursor sequence
Structure
        10          20        30        40        50         
ACCGACCGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
CGCACUAGAGGCUUCGGGU^      G   A           C         UGGGAGGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-142-P2-v2_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
Get sequence
Mature sequence

Cja-Mir-142-P2-v2_3p
mirBase accessionNone
Sequence 
37- GUAGUGUUUCCUACUUUAUGGA -59
Get sequence
Variant

Cja-Mir-142-P2-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
ACCGACCGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGAUCACGC
Get precursor sequence
Structure
        10          20        30        40        50         
ACCGACCGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
CGCACUAGAGGCUUCGGGU^      G   A           C         UGGGAGGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-142-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Cja-Mir-142-P2-v3_3p
mirBase accessionNone
Sequence 
36- UGUAGUGUUUCCUACUUUAUGGA -59
Get sequence
Variant

Cja-Mir-142-P2-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
ACACCGACCGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCACUGGAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGAUCACGCUG
Get precursor sequence
Structure
        10          20        30        40        50        60 
ACACCGACCGACAGACAG--|       G   C           A         UAACAGCA 
                    ACAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                    UGUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        C
GUCGCACUAGAGGCUUCGGG^       G   A           C         UGGGAGGU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
To
Mature sequence

Cja-Mir-142-P2-v4_5p
mirBase accessionNone
Sequence 
0- CCCAUAAAGUAGAAAGCACUAC -22
Get sequence
Star sequence

Cja-Mir-142-P2-v4_3p*
mirBase accessionNone
Sequence 
41- AGUGUUUCCUACUUUAUGGAUG -63
Get sequence