MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-142-P2

Family name MIR-142 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-142
Paralogues
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
Variant

Tgu-Mir-142-P2-v1

Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGA
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Structure
          10        20          
--|         A         UAAACA  A 
  CAUAAAGUAG AAGCACUAC      GC \
  GUAUUUCAUC UUUGUGAUG      CG C
AG^         C         UGGGA-  U 
.        50        40
Deep sequencing
3' NTU No
MotifsNo
Mature sequence

Tgu-Mir-142-P2-v1_5p

mirBase accessionMIMAT0014554
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Tgu-Mir-142-P2-v1_3p*

mirBase accessionMIMAT0026999
Sequence
39- UAGUGUUUCCUACUUUAUGGA -60
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Variant

Tgu-Mir-142-P2-v2

Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGA
Get precursor sequence
Structure
          10        20          
--|         A         UAAACA  A 
  CAUAAAGUAG AAGCACUAC      GC \
  GUAUUUCAUC UUUGUGAUG      CG C
AG^         C         UGGGA-  U 
.        50        40
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Tgu-Mir-142-P2-v2_5p*

mirBase accessionMIMAT0014554
Sequence
0- CAUAAAGUAGAAAGCACUACUA -22
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Mature sequence

Tgu-Mir-142-P2-v2_3p

mirBase accessionMIMAT0026999
Sequence
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Tgu-Mir-142-P2-v3

Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)
CAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGA
Get precursor sequence
Structure
          10        20          
--|         A         UAAACA  A 
  CAUAAAGUAG AAGCACUAC      GC \
  GUAUUUCAUC UUUGUGAUG      CG C
AG^         C         UGGGA-  U 
.        50        40
Deep sequencing
3' NTU No
MotifsNo
Star sequence

Tgu-Mir-142-P2-v3_5p*

mirBase accessionMIMAT0014554
Sequence
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Tgu-Mir-142-P2-v3_3p

mirBase accessionMIMAT0026999
Sequence
37- UGUAGUGUUUCCUACUUUAUGGA -60
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Variant

Tgu-Mir-142-P2-v4

Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)
CCCAUAAAGUAGAAAGCACUACUAAACAGCACUGCAGGGUGUAGUGUUUCCUACUUUAUGGAUG
Get precursor sequence
Structure
          10        20        30  
C--|          A         UAAACA  A 
   CCAUAAAGUAG AAGCACUAC      GC \
   GGUAUUUCAUC UUUGUGAUG      CG C
GUA^          C         UGGGA-  U 
   60        50        40
Deep sequencing
3' NTU No
MotifsNo
Mature sequence

Tgu-Mir-142-P2-v4_5p

mirBase accessionMIMAT0014554
Sequence
0- CCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Tgu-Mir-142-P2-v4_3p*

mirBase accessionMIMAT0026999
Sequence
42- AGUGUUUCCUACUUUAUGGAUG -64
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