MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-142-P4

Family name MIR-142 (all species)
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-142-2
Paralogues Ami-Mir-142-P2-v1 
Orthologues Aca-Mir-142-P4-v1  Cpi-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gja-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710586.1: 18397-18455 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-142-P4-v1)		 Mir-142-P4-v4 NW_017710586.1: 18395-18457 [-] UCSC
Mir-142-P4-v1 NW_017710586.1: 18397-18455 [-] UCSC
Mir-142-P4-v2 NW_017710586.1: 18397-18455 [-] UCSC
Mir-142-P4-v3 NW_017710586.1: 18397-18455 [-] UCSC
Variant

Ami-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GCGACGGCAACGGUGACAGUCUCCCCCCCCCAUAAAGUAGCGAGCACGACUCCGCCCCCGCGCCCGUGUAGUGUUUCCUACUUUAUGGAGGGGGUGGCUGGGAGCAACGGAGACGCGGG
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Structure
        10           20        30        40        50         
GCGACGGCAACGGUGAC---|   U     CC           C      G  UCCGCCCC 
                    AGUC CCCCC  CCAUAAAGUAG GAGCAC AC        \
                    UCGG GGGGG  GGUAUUUCAUC UUUGUG UG        C
GGGCGCAGAGGCAACGAGGG^   U     A-           C      A  UGCCCGCG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Ami-Mir-142-P4-v1_5p
mirBase accessionMIMAT0038164
Sequence 
0- CAUAAAGUAGCGAGCACGACU -21
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Star sequence

Ami-Mir-142-P4-v1_3p* (predicted)
mirBase accessionMIMAT0038163
Sequence 
37- GUAGUGUUUCCUACUUUAUGGA -59
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Variant

Ami-Mir-142-P4-v2
Seed UAGUGUU
Precursor
(pre-Mir +30nt flank)		 
GCGACGGCAACGGUGACAGUCUCCCCCCCCCAUAAAGUAGCGAGCACGACUCCGCCCCCGCGCCCGUGUAGUGUUUCCUACUUUAUGGAGGGGGUGGCUGGGAGCAACGGAGACGCGGG
Get precursor sequence
Structure
        10           20        30        40        50         
GCGACGGCAACGGUGAC---|   U     CC           C      G  UCCGCCCC 
                    AGUC CCCCC  CCAUAAAGUAG GAGCAC AC        \
                    UCGG GGGGG  GGUAUUUCAUC UUUGUG UG        C
GGGCGCAGAGGCAACGAGGG^   U     A-           C      A  UGCCCGCG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-142-P4-v2_5p*
mirBase accessionMIMAT0038164
Sequence 
0- CAUAAAGUAGCGAGCACGACUC -22
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Mature sequence

Ami-Mir-142-P4-v2_3p
mirBase accessionMIMAT0038163
Sequence 
37- GUAGUGUUUCCUACUUUAUGGA -59
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Variant

Ami-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
GCGACGGCAACGGUGACAGUCUCCCCCCCCCAUAAAGUAGCGAGCACGACUCCGCCCCCGCGCCCGUGUAGUGUUUCCUACUUUAUGGAGGGGGUGGCUGGGAGCAACGGAGACGCGGG
Get precursor sequence
Structure
        10           20        30        40        50         
GCGACGGCAACGGUGAC---|   U     CC           C      G  UCCGCCCC 
                    AGUC CCCCC  CCAUAAAGUAG GAGCAC AC        \
                    UCGG GGGGG  GGUAUUUCAUC UUUGUG UG        C
GGGCGCAGAGGCAACGAGGG^   U     A-           C      A  UGCCCGCG 
       110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Ami-Mir-142-P4-v3_5p*
mirBase accessionMIMAT0038164
Sequence 
0- CAUAAAGUAGCGAGCACGACUCC -23
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Mature sequence

Ami-Mir-142-P4-v3_3p
mirBase accessionMIMAT0038163
Sequence 
36- UGUAGUGUUUCCUACUUUAUGGA -59
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Variant

Ami-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
GGGCGACGGCAACGGUGACAGUCUCCCCCCCCCAUAAAGUAGCGAGCACGACUCCGCCCCCGCGCCCGUGUAGUGUUUCCUACUUUAUGGAGGGGGUGGCUGGGAGCAACGGAGACGCGGGGC
Get precursor sequence
Structure
        10           20        30        40        50        60 
GGGCGACGGCAACGGUGA---|    U     CC           C      G  UCCGCCCC 
                     CAGUC CCCCC  CCAUAAAGUAG GAGCAC AC        \
                     GUCGG GGGGG  GGUAUUUCAUC UUUGUG UG        C
CGGGGCGCAGAGGCAACGAGG^    U     A-           C      A  UGCCCGCG 
 120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Mature sequence

Ami-Mir-142-P4-v4_5p
mirBase accessionMIMAT0038164
Sequence 
0- CCCAUAAAGUAGCGAGCACGAC -22
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Star sequence

Ami-Mir-142-P4-v4_3p* (predicted)
mirBase accessionMIMAT0038163
Sequence 
41- AGUGUUUCCUACUUUAUGGAGG -63
Get sequence