MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-142-P4

Family name MIR-142 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-142-P4-v1  Ami-Mir-142-P4-v1  Cpi-Mir-142-P4-v1  Dre-Mir-142-P4-v1  Gmo-Mir-142-P4-v1  Lch-Mir-142-P4  Mal-Mir-142-P4-v1  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Tni-Mir-142-P4-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015172599.1: 181697-181757 [-]
Clustered miRNAs
(< 50kb from Mir-142-P4-v1)		 Mir-142-P4-v4 NW_015172599.1: 181695-181759 [-]
Mir-142-P4-v1 NW_015172599.1: 181697-181757 [-]
Mir-142-P4-v2 NW_015172599.1: 181697-181757 [-]
Mir-142-P4-v3 NW_015172599.1: 181697-181757 [-]
Variant

Gja-Mir-142-P4-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGA
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Structure
        10          20        30        40        50          
GCAGCUGUACUUAAGGA--|    G                 A         UAAACGCUC 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AGCAGCGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Gja-Mir-142-P4-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Gja-Mir-142-P4-v1_3p*
mirBase accessionNone
Sequence 
40- UAGUGUUUCCUACUUUAUGGA -61
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Variant

Gja-Mir-142-P4-v2
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGA
Get precursor sequence
Structure
        10          20        30        40        50          
GCAGCUGUACUUAAGGA--|    G                 A         UAAACGCUC 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AGCAGCGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Mature sequence

Gja-Mir-142-P4-v2_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Star sequence

Gja-Mir-142-P4-v2_3p*
mirBase accessionNone
Sequence 
39- GUAGUGUUUCCUACUUUAUGGA -61
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Variant

Gja-Mir-142-P4-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
GCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGA
Get precursor sequence
Structure
        10          20        30        40        50          
GCAGCUGUACUUAAGGA--|    G                 A         UAAACGCUC 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
AGCAGCGGAGGCAACGAGU^    G                 C         UGAACCUGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Gja-Mir-142-P4-v3_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Gja-Mir-142-P4-v3_3p
mirBase accessionNone
Sequence 
38- UGUAGUGUUUCCUACUUUAUGGA -61
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Variant

Gja-Mir-142-P4-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
CGGCAGCUGUACUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCUCGUGUCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCGACGAUG
Get precursor sequence
Structure
        10          20        30        40        50        60  
CGGCAGCUGUACUUAAGG--|     G                 A         UAAACGCUC 
                    ACAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                    UGUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
GUAGCAGCGGAGGCAACGAG^     G                 C         UGAACCUGU 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
To
Mature sequence

Gja-Mir-142-P4-v4_5p
mirBase accessionNone
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Gja-Mir-142-P4-v4_3p*
mirBase accessionNone
Sequence 
43- AGUGUUUCCUACUUUAUGGAUG -65
Get sequence