MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-142-P2

Family name MIR-142 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-142-P2-v1  Mal-Mir-142-P4-v1 
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Sha-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV885018.1: 158172-158235 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v4)		 Mir-142-P2-v4 KV885018.1: 158172-158235 [+] UCSC Ensembl
Mir-142-P2-v1 KV885018.1: 158174-158233 [+] UCSC Ensembl
Mir-142-P2-v2 KV885018.1: 158174-158233 [+] UCSC Ensembl
Mir-142-P2-v3 KV885018.1: 158174-158233 [+] UCSC Ensembl
Variant

Mal-Mir-142-P2-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
ACGAGGAGCGGUCAAUGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACUCCUCACCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUUCAGGGAGAGGACAG
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Structure
        10          20        30        40        50        60 
ACGAGGAGCGGUCAAUGU--|       G               A         UAAACUCC 
                    ACAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                    UGUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
GACAGGAGAGGGACUUCGGU^       G               C         UGACACCA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P2-v4_5p
mirBase accessionNone
Sequence 
0- UCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Mal-Mir-142-P2-v4_3p*
mirBase accessionNone
Sequence 
42- AGUGUUUCCUACUUUAUGGAUG -64
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Variant

Mal-Mir-142-P2-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGGUCAAUGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACUCCUCACCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUUCAGGGAGAGGAC
Get precursor sequence
Structure
        10          20        30        40        50         
GAGGAGCGGUCAAUGUA--|      G               A         UAAACUCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
CAGGAGAGGGACUUCGGUU^      G               C         UGACACCA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P2-v1_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Mal-Mir-142-P2-v1_3p*
mirBase accessionNone
Sequence 
39- UAGUGUUUCCUACUUUAUGGA -60
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Variant

Mal-Mir-142-P2-v2
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGGUCAAUGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACUCCUCACCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUUCAGGGAGAGGAC
Get precursor sequence
Structure
        10          20        30        40        50         
GAGGAGCGGUCAAUGUA--|      G               A         UAAACUCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
CAGGAGAGGGACUUCGGUU^      G               C         UGACACCA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P2-v2_5p
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Co-mature sequence

Mal-Mir-142-P2-v2_3p
mirBase accessionNone
Sequence 
38- GUAGUGUUUCCUACUUUAUGGA -60
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Variant

Mal-Mir-142-P2-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
GAGGAGCGGUCAAUGUACAGUGCAGUCAUCCAUAAAGUAGAAAGCACUACUAAACUCCUCACCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUUGGCUUCAGGGAGAGGAC
Get precursor sequence
Structure
        10          20        30        40        50         
GAGGAGCGGUCAAUGUA--|      G               A         UAAACUCC 
                   CAGUGCA UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAUGU AGUAGGUAUUUCAUC UUUGUGAUG        C
CAGGAGAGGGACUUCGGUU^      G               C         UGACACCA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-142-P2-v3_5p*
mirBase accessionNone
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Mal-Mir-142-P2-v3_3p
mirBase accessionNone
Sequence 
37- UGUAGUGUUUCCUACUUUAUGGA -60
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