MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-142-P2-v3

Family name MIR-142 (all species)
Seed GUAGUGU
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-142-P1-v1  Mal-Mir-142-P1-v2  Mal-Mir-142-P1-v3  Mal-Mir-142-P1-v4  Mal-Mir-142-P2-v1  Mal-Mir-142-P2-v2  Mal-Mir-142-P2-v4 
Orthologues Aca-Mir-142-P2-v1  Aca-Mir-142-P2-v2  Aca-Mir-142-P2-v3  Aca-Mir-142-P2-v4  Ami-Mir-142-P2-v1  Ami-Mir-142-P2-v2  Ami-Mir-142-P2-v3  Ami-Mir-142-P2-v4  Cpi-Mir-142-P2-v1  Cpi-Mir-142-P2-v2  Cpi-Mir-142-P2-v3  Cpi-Mir-142-P2-v4  Dre-Mir-142-P2-v1  Dre-Mir-142-P2-v2  Dre-Mir-142-P2-v3  Gja-Mir-142-P2-v1  Gja-Mir-142-P2-v2  Gja-Mir-142-P2-v3  Gja-Mir-142-P2-v4  Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Lch-Mir-142-P2  Mun-Mir-142-P2  Pbv-Mir-142-P2-v1  Pbv-Mir-142-P2-v2  Pbv-Mir-142-P2-v3  Pbv-Mir-142-P2-v4  Tni-Mir-142-P2-v1  Tni-Mir-142-P2-v2  Tni-Mir-142-P2-v3  Tni-Mir-142-P2-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884934.1: 669473-669532 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUA
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Structure
        10          20        30        40        50         
AAGAAGCUGCUGAUGUA--|     UG   C           A         UAAACUUU 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
AUGUCAGGAAGCGUCGGUU^     UG   A           C         UGACACGU 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-142-P2-v3_5p*

mirBase accessionNone
Sequence
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Mal-Mir-142-P2-v3_3p

mirBase accessionNone
Sequence
37- UGUAGUGUUUCCUACUUUAUGGA -60
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