MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-142-P2-v4

Family name MIR-142 (all species)
Seed CCAUAAA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-142b
Paralogues Tni-Mir-142-P1-v1  Tni-Mir-142-P1-v2  Tni-Mir-142-P1-v3  Tni-Mir-142-P1-v4  Tni-Mir-142-P2-v1  Tni-Mir-142-P2-v2  Tni-Mir-142-P2-v3 
Orthologues Aca-Mir-142-P2-v1  Aca-Mir-142-P2-v2  Aca-Mir-142-P2-v3  Aca-Mir-142-P2-v4  Ami-Mir-142-P2-v1  Ami-Mir-142-P2-v2  Ami-Mir-142-P2-v3  Ami-Mir-142-P2-v4  Cpi-Mir-142-P2-v1  Cpi-Mir-142-P2-v2  Cpi-Mir-142-P2-v3  Cpi-Mir-142-P2-v4  Dre-Mir-142-P2-v1  Dre-Mir-142-P2-v2  Dre-Mir-142-P2-v3  Gja-Mir-142-P2-v1  Gja-Mir-142-P2-v2  Gja-Mir-142-P2-v3  Gja-Mir-142-P2-v4  Gmo-Mir-142-P2-v1  Gmo-Mir-142-P2-v2  Gmo-Mir-142-P2-v3  Gmo-Mir-142-P2-v4  Lch-Mir-142-P2  Mal-Mir-142-P2-v1  Mal-Mir-142-P2-v2  Mal-Mir-142-P2-v3  Mal-Mir-142-P2-v4  Mun-Mir-142-P2  Pbv-Mir-142-P2-v1  Pbv-Mir-142-P2-v2  Pbv-Mir-142-P2-v3  Pbv-Mir-142-P2-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
16: 3999098-3999161 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v4)
Mir-142-P2-v4 16: 3999098-3999161 [+] UCSC Ensembl
Mir-142-P2-v1 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P2-v2 16: 3999100-3999159 [+] UCSC Ensembl
Mir-142-P2-v3 16: 3999100-3999159 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCAGAACCUUCUGAUGUACAGUGCUGUCACCCAUAAAGUAGAAAGCACUACUAAACGUCUUUACACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGCACUGUUGGCCGCGGAGAAACUCAAC
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Structure
        10          20        30        40        50        60 
ACCAGAACCUUCUGAUGU--|      UG   C           A         UAAACGUC 
                    ACAGUGC  UCA CCAUAAAGUAG AAGCACUAC        U
                    UGUCACG  AGU GGUAUUUCAUC UUUGUGAUG        U
CAACUCAAAGAGGCGCCGGU^      UG   A           C         UGACACAU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-142-P2-v4_5p

mirBase accessionMIMAT0002946
Sequence
0- CCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Tni-Mir-142-P2-v4_3p*

mirBase accessionNone
Sequence
42- AGUGUUUCCUACUUUAUGGAUG -64
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