MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-142-P2

Family name MIR-142 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-142
Paralogues Sha-Mir-142-P2-v1 
Orthologues Ami-Mir-142-P2-v1  Bta-Mir-142-P2-v1  Cfa-Mir-142-P2-v1  Cja-Mir-142-P2-v1  Cli-Mir-142-P2-v1  Cmi-Mir-142-P2-v1  Cpi-Mir-142-P2-v1  Cpo-Mir-142-P2-v1  Dno-Mir-142-P2-v1  Dre-Mir-142-P2-v1  Eca-Mir-142-P2-v1  Ete-Mir-142-P2-v1  Gga-Mir-142-P2-v1  Gmo-Mir-142-P2-v1  Hsa-Mir-142-P2-v1  Lch-Mir-142-P2  Loc-Mir-142-P2-v1  Mal-Mir-142-P2-v1  Mdo-Mir-142-P2-v1  Mml-Mir-142-P2-v1  Mmr-Mir-142-P2-v1  Mmu-Mir-142-P2-v1  Neu-Mir-142-P2-v1  Oan-Mir-142-P2-v1  Ocu-Mir-142-P2-v1  Pab-Mir-142-P2-v1  Rno-Mir-142-P2-v1  Spt-Mir-142-P2  Sto-Mir-142-P2-v1  Tgu-Mir-142-P2-v1  Tni-Mir-142-P2-v1  Xla-Mir-142-P2a1-v1  Xla-Mir-142-P2a2-v1  Xla-Mir-142-P2b1-v1  Xla-Mir-142-P2b2-v1  Xtr-Mir-142-P2a-v1  Xtr-Mir-142-P2b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(DEVIL_add)		 GL856813.1: 835381-835443 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-142-P2-v4)		 Mir-142-P2-v4 GL856813.1: 835381-835443 [+] UCSC Ensembl
Mir-142-P2-v1 GL856813.1: 835383-835441 [+] UCSC Ensembl
Mir-142-P2-v2 GL856813.1: 835383-835441 [+] UCSC Ensembl
Mir-142-P2-v3 GL856813.1: 835383-835441 [+] UCSC Ensembl
Variant

Sha-Mir-142-P2-v4
Seed CCAUAAA
Precursor
(pre-Mir +30nt flank)		 
ACAAACACAGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCAAUGUAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACACGCCGU
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Structure
        10          20        30        40        50        60 
ACAAACACAGACAGACAG--|       G   C           A         UAACAGCA 
                    ACAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                    UGUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        A
UGCCGCACAGAGGCUUCGGG^       G   A           C         UGGGAUGU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-142-P2-v4_5p
mirBase accessionMIMAT0022816
Sequence 
0- CCCAUAAAGUAGAAAGCACUAC -22
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Star sequence

Sha-Mir-142-P2-v4_3p*
mirBase accessionNone
Sequence 
41- AGUGUUUCCUACUUUAUGGAUG -63
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Variant

Sha-Mir-142-P2-v1
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AAACACAGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCAAUGUAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACACGCC
Get precursor sequence
Structure
        10          20        30        40        50         
AAACACAGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        A
CCGCACAGAGGCUUCGGGU^      G   A           C         UGGGAUGU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-142-P2-v1_5p
mirBase accessionMIMAT0022816
Sequence 
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Sha-Mir-142-P2-v1_3p*
mirBase accessionNone
Sequence 
38- UAGUGUUUCCUACUUUAUGGA -59
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Variant

Sha-Mir-142-P2-v2
Seed AUAAAGU
Precursor
(pre-Mir +30nt flank)		 
AAACACAGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCAAUGUAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACACGCC
Get precursor sequence
Structure
        10          20        30        40        50         
AAACACAGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        A
CCGCACAGAGGCUUCGGGU^      G   A           C         UGGGAUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Mir-142-P2-v2_5p
mirBase accessionMIMAT0022816
Sequence 
0- CAUAAAGUAGAAAGCACUACUA -22
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Co-mature sequence

Sha-Mir-142-P2-v2_3p
mirBase accessionNone
Sequence 
37- GUAGUGUUUCCUACUUUAUGGA -59
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Variant

Sha-Mir-142-P2-v3
Seed GUAGUGU
Precursor
(pre-Mir +30nt flank)		 
AAACACAGACAGACAGACAGUGCAGUCACCCAUAAAGUAGAAAGCACUACUAACAGCAAUGUAGGGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGGGCUUCGGAGACACGCC
Get precursor sequence
Structure
        10          20        30        40        50         
AAACACAGACAGACAGA--|      G   C           A         UAACAGCA 
                   CAGUGCA UCA CCAUAAAGUAG AAGCACUAC        \
                   GUCAUGU AGU GGUAUUUCAUC UUUGUGAUG        A
CCGCACAGAGGCUUCGGGU^      G   A           C         UGGGAUGU 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-142-P2-v3_5p*
mirBase accessionMIMAT0022816
Sequence 
0- CAUAAAGUAGAAAGCACUACUAA -23
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Mature sequence

Sha-Mir-142-P2-v3_3p
mirBase accessionNone
Sequence 
36- UGUAGUGUUUCCUACUUUAUGGA -59
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