MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-133-P3

Family name MIR-133 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-133c
Paralogues Xtr-Mir-133-P1-v1  Xtr-Mir-133-P2-v1  Xtr-Mir-133-P3-v1  Xtr-Mir-133-P4-v1 
Orthologues Aae-Mir-133  Aca-Mir-133-P3-v1  Aga-Mir-133  Ami-Mir-133-P3-v1  Asu-Mir-133  Bge-Mir-133  Bta-Mir-133-P3-v1  Cbr-Mir-133  Cel-Mir-133  Cfa-Mir-133-P3-v1  Cin-Mir-133  Cja-Mir-133-P3  Cli-Mir-133-P3-v1  Cmi-Mir-133-P3-v1  Cpi-Mir-133-P3-v1  Cpo-Mir-133-P3-v1  Cte-Mir-133  Dan-Mir-133  Dgr-Mir-133  Dlo-Mir-133  Dma-Mir-133  Dme-Mir-133  Dmo-Mir-133  Dno-Mir-133-P3-v1  Dpu-Mir-133  Dre-Mir-133-P3-v1  Dsi-Mir-133  Dya-Mir-133  Eba-Mir-133  Eca-Mir-133-P3-v1  Efe-Mir-133  Egr-Mir-133  Esc-Mir-133  Ete-Mir-133-P3-v1  Gga-Mir-133-P3-v1  Gja-Mir-133-P3-v1  Gmo-Mir-133-P3-v1  Gpa-Mir-133  Gsp-Mir-133  Hme-Mir-133  Hru-Mir-133  Hsa-Mir-133-P3-v1  Isc-Mir-133  Laf-Mir-133-P3-v1  Lan-Mir-133  Lch-Mir-133-P3  Lgi-Mir-133  Lhy-Mir-133  Llo-Mir-133  Loc-Mir-133-P3-v1  Mal-Mir-133-P3-v1  Mdo-Mir-133-P3-v1  Mgi-Mir-133  Mml-Mir-133-P3-v1  Mmr-Mir-133-P3-v1  Mmu-Mir-133-P3-v1  Mom-Mir-133  Mun-Mir-133-P3-v1  Neu-Mir-133-P3-v1  Oan-Mir-133-P3-v1  Obi-Mir-133  Ofu-Mir-133  Ovu-Mir-133  Pab-Mir-133-P3  Pau-Mir-133  Pbv-Mir-133-P3-v1  Pca-Mir-133  Pcr-Mir-133  Pdu-Mir-133  Pma-Mir-133-o3-v1  Pve-Mir-133  Rno-Mir-133-P3-v1  Rph-Mir-133  Sha-Mir-133-P3-v1  Sma-Mir-133  Snu-Mir-133  Spt-Mir-133-P3  Spu-Mir-133  Sto-Mir-133-P3-v1  Tca-Mir-133  Tgu-Mir-133-P3-v1  Tur-Mir-133  War-Mir-133  Xbo-Mir-133  Xla-Mir-133-P3a-v1  Xla-Mir-133-P3b-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-133-P3-v2)		 Mir-133-P3-v1 chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl
Mir-133-P3-v2 chrUn_NW_016683679v1: 81400-81459 [-] UCSC Ensembl
Mir-1-P3 chrUn_NW_016683679v1: 104671-104732 [-] UCSC Ensembl
Variant

Xtr-Mir-133-P3-v2
Seed UGGUCCC
Precursor
(pre-Mir +30nt flank)		 
GACUCCACCCAAGGUUGAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUGUUGAAUGGAUUUGGUCCCCUUCAACCAGCUGCAGCUGUGCAUUGAUCGCUCUGACGCCGCUG
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Structure
        10          20        30        40        50         
GACUCCACCCAAGGUUG--|    UUU   AA       AA  U  A       CAACUG 
                   AAUGC   GCU  AGCUGGU  AA GG ACCAAAU      U
                   UUACG   CGA  UCGACCA  UU CC UGGUUUA      U
GUCGCCGCAGUCUCGCUAG^    UGU   CG       AC  C  C       GGUAAG 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-133-P3-v2_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAU -22
Get sequence
Mature sequence

Xtr-Mir-133-P3-v2_3p
mirBase accessionMIMAT0003595
Sequence 
38- UUGGUCCCCUUCAACCAGCUGC -60
Get sequence
Proposed targets TargetScanVert: xtr-miR-133c
Variant

Xtr-Mir-133-P3-v1
Seed UUGGUCC
Precursor
(pre-Mir +30nt flank)		 
GACUCCACCCAAGGUUGAAUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCAACUGUUGAAUGGAUUUGGUCCCCUUCAACCAGCUGCAGCUGUGCAUUGAUCGCUCUGACGCCGCUG
Get precursor sequence
Structure
        10          20        30        40        50         
GACUCCACCCAAGGUUG--|    UUU   AA       AA  U  A        AACUG 
                   AAUGC   GCU  AGCUGGU  AA GG ACCAAAUC     U
                   UUACG   CGA  UCGACCA  UU CC UGGUUUAG     U
GUCGCCGCAGUCUCGCUAG^    UGU   CG       AC  C  C        GUAAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsNo
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-133-P3-v1_5p*
mirBase accessionNone
Sequence 
0- AGCUGGUAAAAUGGAACCAAAUC -23
Get sequence
Mature sequence

Xtr-Mir-133-P3-v1_3p
mirBase accessionMIMAT0003595
Sequence 
37- UUUGGUCCCCUUCAACCAGCUGC -60
Get sequence
Proposed targets TargetScanVert: xtr-miR-133c