MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-124-P1

Family name MIR-124 (all species)
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-124
Paralogues Xtr-Mir-124-P1-v1  Xtr-Mir-124-P2-v1  Xtr-Mir-124-P3-v1 
Orthologues Aae-Mir-124  Aca-Mir-124-P1-v1  Aga-Mir-124  Agr-Mir-124  Ami-Mir-124-P1-v1  Asu-Mir-124  Bfl-Mir-124  Bge-Mir-124  Bko-Mir-124  Bla-Mir-124  Bpl-Mir-124  Bta-Mir-124-P1-v1  Cel-Mir-124  Cfa-Mir-124-P1-v1  Cja-Mir-124-P1-v1  Cli-Mir-124-P1-v1  Cmi-Mir-124-P1-v1  Cpi-Mir-124-P1-v1  Cpo-Mir-124-P1-v1  Cte-Mir-124  Dan-Mir-124  Dlo-Mir-124  Dma-Mir-124  Dme-Mir-124  Dmo-Mir-124  Dno-Mir-124-P1-v1  Dpu-Mir-124  Dre-Mir-124-P1a-v1  Dre-Mir-124-P1b-v1  Dsi-Mir-124  Dya-Mir-124  Eba-Mir-124  Eca-Mir-124-P1-v1  Esc-Mir-124  Ete-Mir-124-P1-v1  Gga-Mir-124-P1-v1  Gja-Mir-124-P1-v1  Gmo-Mir-124-P1a-v1  Gmo-Mir-124-P1b-v1  Gpa-Mir-124  Gsp-Mir-124  Hme-Mir-124  Hru-Mir-124  Hsa-Mir-124-P1-v1  Isc-Mir-124  Laf-Mir-124-P1-v1  Lan-Mir-124  Lch-Mir-124-P1  Lhy-Mir-124  Llo-Mir-124  Loc-Mir-124-P1-v1  Mal-Mir-124-P1a-v1  Mal-Mir-124-P1b-v1  Mdo-Mir-124-P1-v1  Mgi-Mir-124  Mml-Mir-124-P1-v1  Mmr-Mir-124-P1-v1  Mmu-Mir-124-P1-v1  Mom-Mir-124  Mun-Mir-124-P1-v1  Neu-Mir-124-P1-v1  Npo-Mir-124  Oan-Mir-124-P1-v1  Obi-Mir-124  Ocu-Mir-124-P1-v1  Ofu-Mir-124  Ovu-Mir-124  Pab-Mir-124-P1-v1  Pau-Mir-124  Pbv-Mir-124-P1-v1  Pdu-Mir-124  Pfl-Mir-124  Pma-Mir-124-o1  Pmi-Mir-124  Pve-Mir-124  Rno-Mir-124-P1-v1  Sha-Mir-124-P1-v1  Sko-Mir-124  Sma-Mir-124  Sne-Mir-124  Snu-Mir-124  Spt-Mir-124-P1  Spu-Mir-124  Sro-Mir-124  Sto-Mir-124-P1-v1  Tca-Mir-124  Tgu-Mir-124-P1-v1  Tni-Mir-124-P1b-v1  War-Mir-124  Xbo-Mir-124  Xla-Mir-124-P1c-v1  Xla-Mir-124-P1d-v1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr6: 103250613-103250670 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-124-P1-v2)		 Mir-124-P1-v1 chr6: 103250613-103250671 [+] UCSC Ensembl
Mir-124-P1-v2 chr6: 103250613-103250670 [+] UCSC Ensembl
Variant

Xtr-Mir-124-P1-v2
Seed UAAGGCA
Precursor
(pre-Mir +30nt flank)		 
AUUUUGGUCCGAUCUAAGUCUCUGACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGUGGAGCCUACAUGCAGCCCGAAGCCU
Get precursor sequence
Structure
        10          20        30        40        50         
AUUUUGGUCCGAUCUAA--|U    G     CC        A   GA        UAAUG 
                   G CUCU ACUCU  GUGUUCAC GCG  CCUUGAUU     \
                   C GAGG UGAGA  CGUAAGUG CGC  GGAAUUAA     U
UCCGAAGCCCGACGUACAU^C    -     AC        G   AC        CAUAC 
      110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-124-P1-v2_5p*
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAUU -23
Get sequence
Mature sequence

Xtr-Mir-124-P1-v2_3p
mirBase accessionMIMAT0003683
Sequence 
36- UUAAGGCACGCGGUGAAUGCCA -58
Get sequence
Proposed targets TargetScanVert: xtr-miR-124
Variant

Xtr-Mir-124-P1-v1
Seed AAGGCAC
Precursor
(pre-Mir +30nt flank)		 
AUUUUGGUCCGAUCUAAGUCUCUGACUCUCCGUGUUCACAGCGGACCUUGAUUUAAUGUCAUACAAUUAAGGCACGCGGUGAAUGCCAAGAGUGGAGCCUACAUGCAGCCCGAAGCCUC
Get precursor sequence
Structure
        10           20        30        40        50         
AUUUUGGUCCGAUCUAA---|U    G     CC        A   GA       UUAAUG 
                    G CUCU ACUCU  GUGUUCAC GCG  CCUUGAU      \
                    C GAGG UGAGA  CGUAAGUG CGC  GGAAUUA      U
CUCCGAAGCCCGACGUACAU^C    -     AC        G   AC       ACAUAC 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
An Br Em Em He Ve
Star sequence

Xtr-Mir-124-P1-v1_5p*
mirBase accessionNone
Sequence 
0- CGUGUUCACAGCGGACCUUGAU -22
Get sequence
Mature sequence

Xtr-Mir-124-P1-v1_3p
mirBase accessionMIMAT0003683
Sequence 
37- UAAGGCACGCGGUGAAUGCCAA -59
Get sequence
Proposed targets TargetScanVert: xtr-miR-124