Mir-133-P1b-v2

MirGeneDB ID

Xla-Mir-133-P1b-v2

Family name

MIR-133 (all species)

Seed

UGGUCCC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-133a

Paralogues

Xla-Mir-133-P1a-v1 Xla-Mir-133-P1a-v2 Xla-Mir-133-P1b-v1 Xla-Mir-133-P2c-v1 Xla-Mir-133-P2c-v2 Xla-Mir-133-P2d-v1 Xla-Mir-133-P2d-v2 Xla-Mir-133-P3a-v1 Xla-Mir-133-P3a-v2 Xla-Mir-133-P3b-v1 Xla-Mir-133-P3b-v2 Xla-Mir-133-P4a Xla-Mir-133-P4b

Orthologues

Aae-Mir-133 Aca-Mir-133-P1-v1 Aca-Mir-133-P1-v2 Ami-Mir-133-P1-v1 Ami-Mir-133-P1-v2 Asu-Mir-133 Bge-Mir-133 Bta-Mir-133-P1-v1 Bta-Mir-133-P1-v2 Cbr-Mir-133 Cel-Mir-133 Cfa-Mir-133-P1-v1 Cfa-Mir-133-P1-v2 Cgi-Mir-133 Cin-Mir-133 Cli-Mir-133-P1-v1 Cli-Mir-133-P1-v2 Cmi-Mir-133-P1-v1 Cmi-Mir-133-P1-v2 Cpi-Mir-133-P1-v1 Cpi-Mir-133-P1-v2 Cpo-Mir-133-P1-v1 Cpo-Mir-133-P1-v2 Cte-Mir-133 Dan-Mir-133 Dma-Mir-133 Dme-Mir-133 Dmo-Mir-133 Dno-Mir-133-P1-v1 Dno-Mir-133-P1-v2 Dpu-Mir-133 Dre-Mir-133-P1-v1 Dre-Mir-133-P1-v2 Dsi-Mir-133 Dya-Mir-133 Efe-Mir-133 Esc-Mir-133 Ete-Mir-133-P1-v1 Ete-Mir-133-P1-v2 Gga-Mir-133-P1-v1 Gga-Mir-133-P1-v2 Gja-Mir-133-P1-v1 Gja-Mir-133-P1-v2 Gmo-Mir-133-P1-v1 Gmo-Mir-133-P1-v2 Hme-Mir-133 Hsa-Mir-133-P1-v1 Hsa-Mir-133-P1-v2 Isc-Mir-133 Lan-Mir-133 Lch-Mir-133-P1 Lgi-Mir-133 Loc-Mir-133-P1-v1 Loc-Mir-133-P1-v2 Mal-Mir-133-P1-v1 Mal-Mir-133-P1-v2 Mdo-Mir-133-P1-v1 Mdo-Mir-133-P1-v2 Mml-Mir-133-P1-v1 Mml-Mir-133-P1-v2 Mmu-Mir-133-P1-v1 Mmu-Mir-133-P1-v2 Mun-Mir-133-P1-v1 Mun-Mir-133-P1-v2 Oan-Mir-133-P1-v1 Oan-Mir-133-P1-v2 Obi-Mir-133 Ocu-Mir-133-P1-v1 Ocu-Mir-133-P1-v2 Ovu-Mir-133 Pbv-Mir-133-P1-v1 Pbv-Mir-133-P1-v2 Pma-Mir-133-o1-v1 Pma-Mir-133-o1-v2 Rno-Mir-133-P1-v1 Rno-Mir-133-P1-v2 Sha-Mir-133-P1-v1 Sha-Mir-133-P1-v2 Spt-Mir-133-P1 Spu-Mir-133 Sto-Mir-133-P1-v1 Sto-Mir-133-P1-v2 Tca-Mir-133 Tgu-Mir-133-P1-v1 Tgu-Mir-133-P1-v2 Tni-Mir-133-P1-v1 Tni-Mir-133-P1-v2 Xbo-Mir-133 Xtr-Mir-133-P1-v1 Xtr-Mir-133-P1-v2

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030735.1: 85996921-85996980 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-133-P1b-v2)

Mir-133-P1b-v1 NC_030735.1: 85996921-85996980 [-] UCSC Ensembl
Mir-133-P1b-v2 NC_030735.1: 85996921-85996980 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAUUUUUAUUGCGCUGCAGUGCUUUGCUAAAGCUGGUAAAAUGGAACCAAAUCACCUCUUCAAUGGAUUUGGUCCCCUUCAACCAGCUGUAGGAUUGCAUUGAGGACUACAUAUCCACGG

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Structure

        10          20        30        40        50         
UAUUUUUAUUGCGCUGC--|    UUUG   A       AA  U  A       CACCUC 
                   AGUGC    CUA AGCUGGU  AA GG ACCAAAU      U
                   UUACG    GAU UCGACCA  UU CC UGGUUUA      U
GGCACCUAUACAUCAGGAG^    UUAG   G       AC  C  C       GGUAAC 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Eg	He	Re	St	St	St	St

Star sequence

Xla-Mir-133-P1b-v2_5p*

mirBase accession

None

Sequence

0- AGCUGGUAAAAUGGAACCAAAU -22

Get sequence

Mature sequence

Xla-Mir-133-P1b-v2_3p

mirBase accession

MIMAT0001350

Sequence

38- UUGGUCCCCUUCAACCAGCUGU -60

Get sequence