MirGeneDB 3.0
MirGeneDB ID

Tur-Mir-10-P1z

Family name MIR-10 (all species)
Species Two-spotted spider mite (Tetranychus urticae)
MiRBase ID tur-mir-10
Paralogues Tur-Mir-10-P1y  Tur-Mir-10-P1z-v1  Tur-Mir-10-P2  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Orthologues Aae-Mir-10-P1-v1  Adi-Mir-10  Aga-Mir-10-P1-v1  Agr-Mir-10-P1  Asp-Mir-10  Asu-Mir-10-P1  Bfl-Mir-10-P1-v1  Bge-Mir-10-P1-v1  Bla-Mir-10-P1-v1  Cbr-Mir-10-P1  Cel-Mir-10-P1  Cte-Mir-10-P1  Dan-Mir-10-P1  Dgr-Mir-10-P1  Dlo-Mir-10-P1-v1  Dma-Mir-10-P1-v1  Dme-Mir-10-P1  Dmo-Mir-10-P1  Dpu-Mir-10-P1-v1  Dsi-Mir-10-P1  Dya-Mir-10-P1  Eba-Mir-10-P1  Efe-Mir-10-P1  Egr-Mir-10-P1  Gpa-Mir-10-P1  Gsp-Mir-10-P1  Hme-Mir-10-P1-v1  Hru-Mir-10-P1  Isc-Mir-10-P1-v1  Lgi-Mir-10-P1  Lhy-Mir-10-P1  Llo-Mir-10-P1  Mgi-Mir-10-P1  Mom-Mir-10-P1  Npo-Mir-10-P1  Nve-Mir-10  Ofu-Mir-10-P1  Pau-Mir-10-P1  Pca-Mir-10-P1  Pdu-Mir-10-P1  Pfl-Mir-10-P1  Pmi-Mir-10-P1  Pve-Mir-10-P1  Rph-Mir-10-P1  Sko-Mir-10-P1  Sma-Mir-10-P1  Snu-Mir-10-P1  Spu-Mir-10-P1  Tca-Mir-10-P1-v1  War-Mir-10-P1  Xbo-Mir-10-P1 
Node of Origin (locus) T. urticae
Node of Origin (family) Eumetazoa
Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)		 HE587320.1: 1111620-1111682 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P1z-v2)		 Mir-10-P1z-v2 HE587320.1: 1111620-1111682 [+] Ensembl
Mir-10-P1z-v1 HE587320.1: 1111621-1111681 [+] Ensembl
Variant

Tur-Mir-10-P1z-v2
Seed ACCCUGU
Precursor
(pre-Mir +30nt flank)		 
UGUGUGUUUGACCAACUAUUGCUCUACAUUCACCCUGUAGAUCCGAAUUUGUCAGAAAAUUGAUUUGCCACGAAUUCGGCUCUAGAGAGGUUUGUGUGGUGCAUAUCAUGCAUCAUCUACUCC
Get precursor sequence
Structure
        10         20        30         40        50        60 
UGUGUGUUUGACCAACUAU-   U      UC   -| G    U          CAGAAAAU 
                    UGC CUACAU  ACC CU UAGA CCGAAUUUGU        \
                    ACG GGUGUG  UGG GA AUCU GGCUUAAGCA        U
CCUCAUCUACUACGUACUAU   U      UU   A^ G    C          CCGUUUAG 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
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Mature sequence

Tur-Mir-10-P1z-v2_5p
mirBase accessionMIMAT0023026
Sequence 
0- CACCCUGUAGAUCCGAAUUUGU -22
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Star sequence

Tur-Mir-10-P1z-v2_3p*
mirBase accessionMIMAT0023027
Sequence 
41- GAAUUCGGCUCUAGAGAGGUUU -63
Get sequence
Variant

Tur-Mir-10-P1z-v1
Seed CCCUGUA
Precursor
(pre-Mir +30nt flank)		 
GUGUGUUUGACCAACUAUUGCUCUACAUUCACCCUGUAGAUCCGAAUUUGUCAGAAAAUUGAUUUGCCACGAAUUCGGCUCUAGAGAGGUUUGUGUGGUGCAUAUCAUGCAUCAUCUACUC
Get precursor sequence
Structure
        10         20        30         40        50          
GUGUGUUUGACCAACUAU-   U      UC   -| G    U          CAGAAAAU 
                   UGC CUACAU  ACC CU UAGA CCGAAUUUGU        \
                   ACG GGUGUG  UGG GA AUCU GGCUUAAGCA        U
CUCAUCUACUACGUACUAU   U      UU   A^ G    C          CCGUUUAG 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
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Mature sequence

Tur-Mir-10-P1z-v1_5p
mirBase accessionMIMAT0023026
Sequence 
0- ACCCUGUAGAUCCGAAUUUGU -21
Get sequence
Star sequence

Tur-Mir-10-P1z-v1_3p*
mirBase accessionMIMAT0023027
Sequence 
40- GAAUUCGGCUCUAGAGAGGUU -61
Get sequence