MirGeneDB ID | Tgu-Mir-1805 |
Family name |
MIR-1805 (all species) |
Seed |
GUAUUGG |
Species |
Zebra finch (Taeniopygia guttata) |
MiRBase ID |
tgu-mir-1805
|
Paralogues |
|
Orthologues |
Aca-Mir-1805
Ami-Mir-1805
Cli-Mir-1805
Cpi-Mir-1805
Gga-Mir-1805
Gja-Mir-1805-P3
Gja-Mir-1805-P4
Mdo-Mir-1805
Pbv-Mir-1805
Sha-Mir-1805
Spt-Mir-1805
Xla-Mir-1805-P1
Xla-Mir-1805-P2
Xtr-Mir-1805
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (TaeGut1_add) |
1: 81902953-81903013 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCAGUAAAUGAGAAAGUGGAAUAUUCUGGGAGUUGUAGUCUUUCAAACAGAGCUUCACAAGGACAUACCUGUAUUGGAACACUACAGCUCCCUGAACUUCCUCGCCUCACUGCCUAUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAGUAAAUGAGAAAGU---| UA U C - AGCUUCAC
GGAA UUC GGGAGUUGUAGU UUUCAA ACAG A
CCUU AAG CCCUCGACAUCA AAGGUU UGUC A
AAAGUAUCCGUCACUCCGCU^ C- U C A CAUACAGG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut on the 5p arm -1. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Tgu-Mir-1805_5p* |
mirBase accession | MIMAT0014620 |
Sequence |
0- AGUUGUAGUCUUUCAAACAGA -21
Get sequence
|
Mature sequence |
Tgu-Mir-1805_3p |
mirBase accession | MIMAT0014453 |
Sequence |
39- UGUAUUGGAACACUACAGCUCC -61
Get sequence
|