MirGeneDB 3.0

MirGeneDB ID

Sha-Mir-1805

Family name MIR-1805 (all species)
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1805  Ami-Mir-1805  Cli-Mir-1805  Cpi-Mir-1805  Gga-Mir-1805  Gja-Mir-1805-P3  Gja-Mir-1805-P4  Mdo-Mir-1805  Neu-Mir-1805  Pbv-Mir-1805  Spt-Mir-1805  Tgu-Mir-1805  Xla-Mir-1805-P1  Xla-Mir-1805-P2  Xtr-Mir-1805 
Node of Origin (locus) Tetrapoda
Node of Origin (family) Tetrapoda
Genome context
(DEVIL_add)
GL850024.1: 49162-49222 [+] UCSC Ensembl
Seed GUAUUGG
Precursor
(pre-Mir +30nt flank)
UGGGAAAGAAUGCAAGGGAUGGAUUCUGGGAGUUGUAGCCUUUCAAACAGAGCUUUGUAUGUAUACACCUGUAUUGGAACACUACAGCUCCCCGAACUUCCUCAUGUCACUCCCUGUCUAA
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Structure
        10         20          30        40         50         
UGGGAAAGAAUGCAAGG-  U   --   U           CC      -|   AGCUUUGU 
                  GA GGA  UUC GGGAGUUGUAG  UUUCAA ACAG        A
                  CU CCU  AAG CCCUCGACAUC  AAGGUU UGUC        U
AAUCUGUCCCUCACUGUA  -   UC   C           AC      A^   CACAUAUG 
 .       110        100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-1805_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUGUAGCCUUUCAAACAGA -21
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Mature sequence

Sha-Mir-1805_3p

mirBase accessionNone
Sequence
39- UGUAUUGGAACACUACAGCUCC -61
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