| MirGeneDB ID | Xla-Mir-1805-P1 |
|---|
| Family name |
MIR-1805 (all species) |
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| Species |
African clawed frog (Xenopus laevis) |
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| MiRBase ID |
|
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| Paralogues |
Xla-Mir-1805-P2
|
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| Orthologues |
Aca-Mir-1805
Ami-Mir-1805
Cli-Mir-1805
Cpi-Mir-1805
Gga-Mir-1805
Mdo-Mir-1805
Neu-Mir-1805
Pbv-Mir-1805
Sha-Mir-1805
Spt-Mir-1805
Tgu-Mir-1805
Xtr-Mir-1805
|
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| Node of Origin (locus) |
X. laevis
|
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| Node of Origin (family) |
Tetrapoda
|
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Genome context
(GCF_001663975.1_XLA_v2) |
NC_030726.1: 112903529-112903587 [+]
UCSC
Ensembl
|
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| Seed |
GUAUUGG |
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Precursor
(pre-Mir +30nt flank) |
CGUGUGUAUGAUAAAAUGGAAUGCUCUGGGAGUUGUAGUCUUUCAAACAGCUGUGAAUUUCUAUACCUGUAUUGGAACACUACAGCUCCUAGAAAUUCCUAGUCUCUCAGUCAUCAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGUGUGUAUGAUAAAAU---| GC C - CUGUGAA
GGAAU UCUGGGAGUUGUAGU UUUCAA ACAG U
CCUUA AGAUCCUCGACAUCA AAGGUU UGUC U
AGAACUACUGACUCUCUGAU^ A- C A CAUAUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | There is a second Drosha cut -1 on both arms. |
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Xla-Mir-1805-P1_5p* |
| mirBase accession | None |
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| Sequence |
0- AGUUGUAGUCUUUCAAACAGC -21
Get sequence
|
|---|
| Mature sequence |
Xla-Mir-1805-P1_3p |
| mirBase accession | None |
|---|
| Sequence |
37- UGUAUUGGAACACUACAGCUCC -59
Get sequence
|
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