MirGeneDB 2.1
MirGeneDB ID

Xla-Mir-1805-P2

Family name MIR-1805 (all species)
Seed GUAUUGG
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1805-P1 
Orthologues Aca-Mir-1805  Ami-Mir-1805  Cli-Mir-1805  Cpi-Mir-1805  Gga-Mir-1805  Mdo-Mir-1805  Pbv-Mir-1805  Sha-Mir-1805  Spt-Mir-1805  Tgu-Mir-1805  Xtr-Mir-1805 
Node of Origin (locus) X. laevis
Node of Origin (family) Tetrapoda
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 95936177-95936237 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUAUAUGUGAUAAAAUGGAAUGCUCUGGGAGUUGUAGCCUUUCAAACAGCUGUGAAUUUCUAUACCUGUAUUGGAACACUACAGCUCCUAGAAAUUCCUAGUCUCUCAGUCAUCAAGAG
Get precursor sequence
Structure
        10           20        30        40         50         
AUCUAUAUGUGAUAAAAU---|    GC              CC      -    CUGUGAA 
                     GGAAU  UCUGGGAGUUGUAG  UUUCAA ACAG       U
                     CCUUA  AGAUCCUCGACAUC  AAGGUU UGUC       U
GAGAACUACUGACUCUCUGAU^    A-              AC      A    CAUAUCU 
 .       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Eg He Re St St St St
Star sequence

Xla-Mir-1805-P2_5p*
mirBase accessionNone
Sequence 
0- GAGUUGUAGCCUUUCAAACAGC -22
Get sequence
Mature sequence

Xla-Mir-1805-P2_3p
mirBase accessionNone
Sequence 
38- UGUAUUGGAACACUACAGCUCCU -61
Get sequence