MirGeneDB ID | Aca-Mir-1805 |
Family name |
MIR-1805 (all species) |
Species |
Green anole lizard (Anolis carolinensis) |
MiRBase ID |
aca-mir-1805
|
Paralogues |
|
Orthologues |
Ami-Mir-1805
Cli-Mir-1805
Cpi-Mir-1805
Gga-Mir-1805
Gja-Mir-1805-P3
Gja-Mir-1805-P4
Mdo-Mir-1805
Neu-Mir-1805
Pbv-Mir-1805
Sha-Mir-1805
Spt-Mir-1805
Tgu-Mir-1805
Xla-Mir-1805-P1
Xla-Mir-1805-P2
Xtr-Mir-1805
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (anoCar2) |
3: 110979911-110979971 [+]
UCSC
Ensembl
|
Seed |
GUAUUGG |
Precursor (pre-Mir +30nt flank) |
GCAUGAUGUGAAAGAACGGAACAUUCUAGGAGUUGUAGUCUUUCAAACAGAGCUUUGCAAGUACAUACCUGUAUUGGAACACUACAGCUCCAGGAACUUUCCAGUGUCACUGGCUGUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAUGAUGUGAAAGAAC-- CA A C -| AGCUUUGC
GGAA UUCU GGAGUUGUAGU UUUCAA ACAG A
CCUU AAGG CCUCGACAUCA AAGGUU UGUC A
AAAGUGUCGGUCACUGUGA UC A C A^ CAUACAUG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Aca-Mir-1805_5p* |
mirBase accession | MIMAT0021807 |
Sequence |
0- AGUUGUAGUCUUUCAAACAGA -21
Get sequence
|
Mature sequence |
Aca-Mir-1805_3p |
mirBase accession | MIMAT0021808 |
Sequence |
39- UGUAUUGGAACACUACAGCUCC -61
Get sequence
|