MirGeneDB ID | Pbv-Mir-1805 |
Family name |
MIR-1805 (all species) |
Species |
Burmese python (Python bivittatus) |
MiRBase ID |
pbv-mir-1805
|
Paralogues |
|
Orthologues |
Aca-Mir-1805
Ami-Mir-1805
Cli-Mir-1805
Cpi-Mir-1805
Gga-Mir-1805
Gja-Mir-1805-P3
Gja-Mir-1805-P4
Mdo-Mir-1805
Neu-Mir-1805
Sha-Mir-1805
Spt-Mir-1805
Tgu-Mir-1805
Xla-Mir-1805-P1
Xla-Mir-1805-P2
Xtr-Mir-1805
|
Node of Origin (locus) |
Tetrapoda
|
Node of Origin (family) |
Tetrapoda
|
Genome context (GCA_000186305.2_Python_molurus_bivittatus) |
KE957885.1: 57331-57391 [+]
|
Seed |
GUAUUGG |
Precursor (pre-Mir +30nt flank) |
GCAGGAUAUGAAAGAAUGGAAUAUUCUAGGAGUUGUAGUGUUUCAAACAGAGCUUUGCAAGAACAUACCUGUAUUGGAACACUACAGCUCCAGGAACUUCCUAGUGUCACUGGCUGUGAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
GCAGGAUAUGAAAGAAU---| UA A - AGCUUUGC
GGAA UUCU GGAGUUGUAGUGUUUCAA ACAG A
CCUU AAGG CCUCGACAUCACAAGGUU UGUC A
AAAGUGUCGGUCACUGUGAU^ C- A A CAUACAAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
|
|
Star sequence |
Pbv-Mir-1805_5p* |
mirBase accession | MIMAT0039087 |
Sequence |
0- AGUUGUAGUGUUUCAAACAGA -21
Get sequence
|
Mature sequence |
Pbv-Mir-1805_3p |
mirBase accession | MIMAT0039088 |
Sequence |
39- UGUAUUGGAACACUACAGCUCC -61
Get sequence
|