MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-1329

Family name MIR-1329 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1329
Paralogues Tgu-Mir-1329-v1 
Orthologues Ami-Mir-1329  Bta-Mir-1329  Cmi-Mir-1329  Ebu-Mir-1329  Eca-Mir-1329  Laf-Mir-1329  Mdo-Mir-1329  Mmr-Mir-1329  Mun-Mir-1329  Neu-Mir-1329  Pbv-Mir-1329  Pma-Mir-1329  Sha-Mir-1329  Spt-Mir-1329  Sto-Mir-1329  Xtr-Mir-1329 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
3: 15194065-15194123 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-1329-v2)
Mir-1329-v1 3: 15194064-15194124 [-] UCSC Ensembl
Mir-1329-v2 3: 15194065-15194123 [-] UCSC Ensembl
Variant

Tgu-Mir-1329-v2

Seed CAGUGAU
Precursor
(pre-Mir +30nt flank)
AGACACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCAGGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAACAGGUUUCUU
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Structure
        10          20        30        40        50         
AGACACAAGUCUUGGUCU--|  UG   A    CA               U  AUUUCUC 
                    GGU  UAG GAUA  GUGAUCAGGUUACGA GG       A
                    UCA  AUC CUAU  CACUAGUUCGAUGCU CC       A
UUCUUUGGACAACAAAGAGU^  GU   C    AG               -  AACAAUG 
       110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1329-v2_5p

mirBase accessionMIMAT0014449
Sequence
0- ACAGUGAUCAGGUUACGAUGGAU -23
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Star sequence

Tgu-Mir-1329-v2_3p*

mirBase accessionMIMAT0026956
Sequence
37- CCUCGUAGCUUGAUCACGAUAU -59
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Variant

Tgu-Mir-1329-v1

Seed ACAGUGA
Precursor
(pre-Mir +30nt flank)
UAGACACAAGUCUUGGUCUGGUUGUAGAGAUACAGUGAUCAGGUUACGAUGGAUUUCUCAAGUAACAACCUCGUAGCUUGAUCACGAUAUCCCUAUGACUUGAGAAACAACAGGUUUCUUU
Get precursor sequence
Structure
        10          20        30        40        50        60
UAGACACAAGUCUUGGU--|U   UG   A    CA               U  AUUUCUC 
                   C GGU  UAG GAUA  GUGAUCAGGUUACGA GG       A
                   G UCA  AUC CUAU  CACUAGUUCGAUGCU CC       A
UUUCUUUGGACAACAAAGA^U   GU   C    AG               -  AACAAUG 
 .       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1329-v1_5p

mirBase accessionMIMAT0014449
Sequence
0- UACAGUGAUCAGGUUACGAUGGA -23
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Star sequence

Tgu-Mir-1329-v1_3p*

mirBase accessionMIMAT0026956
Sequence
39- CUCGUAGCUUGAUCACGAUAUC -61
Get sequence