MirGeneDB 3.0

MirGeneDB ID

Tgu-Mir-101-P2

Family name MIR-101 (all species)
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-101-1
Paralogues Tgu-Mir-101-P1-v1  Tgu-Mir-101-P2-v1 
Orthologues Aca-Mir-101-P2-v1  Ami-Mir-101-P2-v1  Bta-Mir-101-P2-v1  Cfa-Mir-101-P2-v1  Cja-Mir-101-P2-v1  Cli-Mir-101-P2-v1  Cmi-Mir-101-P2-v1  Cpi-Mir-101-P2-v1  Cpo-Mir-101-P2-v1  Dno-Mir-101-P2-v1  Dre-Mir-101-P2-v1  Eca-Mir-101-P2-v1  Ete-Mir-101-P2-v1  Gga-Mir-101-P2-v1  Gja-Mir-101-P2-v1  Gmo-Mir-101-P2-v1  Hsa-Mir-101-P2-v1  Laf-Mir-101-P2-v1  Lch-Mir-101-P2  Loc-Mir-101-P2-v1  Mal-Mir-101-P2-v1  Mdo-Mir-101-P2-v1  Mml-Mir-101-P2-v1  Mmr-Mir-101-P2-v1  Mmu-Mir-101-P2-v1  Mun-Mir-101-P2-v1  Neu-Mir-101-P2-v1  Oan-Mir-101-P2-v1  Ocu-Mir-101-P2-v1  Pab-Mir-101-P2-v1  Pbv-Mir-101-P2-v1  Rno-Mir-101-P2-v1  Sha-Mir-101-P2-v1  Spt-Mir-101-P2  Sto-Mir-101-P2-v1  Tni-Mir-101-P2-v1  Xla-Mir-101-P2a-v1  Xla-Mir-101-P2b-v1  Xtr-Mir-101-P2-v1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
Z: 68899073-68899129 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-101-P2-v2)
Mir-101-P2-v1 Z: 68899072-68899130 [+] UCSC Ensembl
Mir-101-P2-v2 Z: 68899073-68899129 [+] UCSC Ensembl
Variant

Tgu-Mir-101-P2-v2

Seed UACAGUA
Precursor
(pre-Mir +30nt flank)
CAAAUAAUAAGAGUAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUGAGAGCUAAA
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Structure
        10          20        30        40        50        
CAAAUAAUAAGAGUAUGA--| UG  C                    CG     GUAUA 
                    AC  UC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                    UG  GG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
AAAUCGAGAGUACACUACCG^ GU  U                    A-     AAAGU 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-101-P2-v2_5p*

mirBase accessionMIMAT0031101
Sequence
0- CGGUUAUCAUGGUACCGGUGCUG -23
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Mature sequence

Tgu-Mir-101-P2-v2_3p

mirBase accessionMIMAT0014508
Sequence
35- GUACAGUACUGUGAUAACUGAA -57
Get sequence
Variant

Tgu-Mir-101-P2-v1

Seed ACAGUAC
Precursor
(pre-Mir +30nt flank)
UCAAAUAAUAAGAGUAUGAACUGUCCUUUUUCGGUUAUCAUGGUACCGGUGCUGUAUACGUGAAAGGUACAGUACUGUGAUAACUGAAGAAUGGUGGUGCCAUCACAUGAGAGCUAAAA
Get precursor sequence
Structure
        10          20        30        40        50         
UCAAAUAAUAAGAGUAUGA--| UG  C                    CG     GUAUA 
                     AC  UC UUUUUCGGUUAUCAUGGUAC  GUGCU     C
                     UG  GG AAGAAGUCAAUAGUGUCAUG  CAUGG     G
AAAAUCGAGAGUACACUACCG^ GU  U                    A-     AAAGU 
       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-101-P2-v1_5p*

mirBase accessionMIMAT0031101
Sequence
0- UCGGUUAUCAUGGUACCGGUGCU -23
Get sequence
Mature sequence

Tgu-Mir-101-P2-v1_3p

mirBase accessionMIMAT0014508
Sequence
37- UACAGUACUGUGAUAACUGAAG -59
Get sequence