MirGeneDB ID | Spt-Mir-383 |
---|---|
Family name | MIR-383 (all species) |
Seed | GAUCAGA |
Species | Tuatara (Sphenodon punctatus) |
MiRBase ID | |
Paralogues | |
Orthologues | Aca-Mir-383-v1 Aca-Mir-383-v2 Ami-Mir-383-v1 Ami-Mir-383-v2 Bta-Mir-383-v1 Bta-Mir-383-v2 Cfa-Mir-383-v1 Cfa-Mir-383-v2 Cli-Mir-383-v1 Cli-Mir-383-v2 Cpi-Mir-383-v1 Cpi-Mir-383-v2 Cpo-Mir-383-v1 Cpo-Mir-383-v2 Dno-Mir-383-v1 Dno-Mir-383-v2 Ete-Mir-383-v1 Ete-Mir-383-v2 Gga-Mir-383-v1 Gga-Mir-383-v2 Gja-Mir-383-v1 Gja-Mir-383-v2 Hsa-Mir-383-v1 Hsa-Mir-383-v2 Mdo-Mir-383-v1 Mdo-Mir-383-v2 Mml-Mir-383-v1 Mml-Mir-383-v2 Mmu-Mir-383-v1 Mmu-Mir-383-v2 Mun-Mir-383 Oan-Mir-383-v1 Oan-Mir-383-v2 Ocu-Mir-383-v1 Ocu-Mir-383-v2 Pbv-Mir-383-v1 Pbv-Mir-383-v2 Rno-Mir-383-v1 Rno-Mir-383-v2 Sha-Mir-383-v1 Sha-Mir-383-v2 Tgu-Mir-383-v1 Tgu-Mir-383-v2 Xla-Mir-383-P1 Xla-Mir-383-P2 Xtr-Mir-383-v1 Xtr-Mir-383-v2 |
Node of Origin (locus) | Tetrapoda |
Node of Origin (family) | Tetrapoda |
Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01007949.1: 831381-831442 [+] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | ACAAGAGAACCUUCCAGUCACCUGCUCCUCAGAUCAGAAGGUGAUUGUGGCUUUGAGUAGCUAAUAAGCAGCCACAGCACUGCCUGGUCAGAAAGAGCAAGUGUACUAGCCUUUUGCCUCCUGet precursor sequence |
Structure | 10 20 30 40 50 60 ACAAGAGAACCUUCCAGU- C C-| A AA A UUGAGUAG CAC UGCUC UC GAUCAG GGUG UUGUGGCU \ GUG ACGAG AG CUGGUC UCAC GACACCGA C UCCUCCGUUUUCCGAUCAU A AA^ A CG - CGAAUAAU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Mature sequence | Spt-Mir-383_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGAUCAGAAGGUGAUUGUGGCU -22
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|
Star sequence | Spt-Mir-383_3p* (predicted) |
mirBase accession | None |
Sequence |
41- CCACAGCACUGCCUGGUCAGA -62
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